Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G08
         (1271 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.35 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   3.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.35
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 832 PGXPPXXPPPGPPPXXXPAXXP 897
           P  P   PPPG PP   P+  P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 841 PPXXPPPGPPPXXXPA 888
           PP   PPG PP   P+
Sbjct: 46  PPPGGPPGAPPSQNPS 61



 Score = 22.2 bits (45), Expect = 9.9
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +1

Query: 835 GXPPXXPPPGPPPXXXPAXXPXXXXPXXPPGGGGG 939
           G P   P P   P       P       PPGG  G
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 1214 GPPPPXXXGXPPPXXP 1167
            GPPP    G PP   P
Sbjct: 45   GPPPGGPPGAPPSQNP 60


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 35  PXWGHIKPLXNFLSQLWKII*LRNE 109
           P WGH+  L  F  +L K +   NE
Sbjct: 862 PRWGHLSTLVEFALELKKALSSINE 886


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 341,145
Number of Sequences: 438
Number of extensions: 14362
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43582869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)