Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G07
(1183 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 43 7e-05
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 40 7e-04
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 32 0.14
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 1.3
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 27 6.7
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 6.7
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 6.7
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 27 6.7
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 26 8.9
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 8.9
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 8.9
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 26 8.9
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 8.9
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 43.2 bits (97), Expect = 7e-05
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = +1
Query: 208 IPENVTKNESSKPRKYKSKRVRTSFTWDQQLMLEETFEKTQYITGIDRRELAQKL--GIG 381
I N KN + K +R RT T + +LE+ F KT + I+R+EL++KL +
Sbjct: 18 ISNNEAKNHEDEETHQKKRRRRT--TDAEATLLEQYFLKTPKPSLIERQELSKKLKSSMT 75
Query: 382 EKCIKIWFQNRRMKNKRKS 438
+ ++IWFQN+R +R +
Sbjct: 76 PRELQIWFQNKRQSLRRSN 94
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 39.9 bits (89), Expect = 7e-04
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = +1
Query: 214 ENVTKNESSKPRKYKSKRVRTSFTWDQQLMLEETFEKTQYITGIDRRELAQKLGIGEKCI 393
E+ T KSK+ R T DQ L F K R ++ ++L I E+ +
Sbjct: 153 ESGTPESGGSTSAPKSKKQR--LTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSV 210
Query: 394 KIWFQNRRMKNK 429
IWFQNRR K+K
Sbjct: 211 TIWFQNRRAKSK 222
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 32.3 bits (70), Expect = 0.14
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +1
Query: 448 SDSYTEAECSSTSDTPKPVPARIS-SAVNMTFPHNEYVLPSNVGRNLFNIAQGTQFVRPS 624
S+ YT + SS P PAR +A+N + N V +V F++ TQ
Sbjct: 325 SNLYTNSNSSSIVQNPLQ-PARTGPAAINYNYTTNYSVSSPSVTNPFFDVGSSTQNASLM 383
Query: 625 YDTGFPYDTNMYPTQYYPNN 684
TG+P N YY N+
Sbjct: 384 GSTGYPSSAN---NVYYENS 400
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 29.1 bits (62), Expect = 1.3
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Frame = +1
Query: 475 SSTSDTPKPVPARISSAVNMTFPHNEY-------VLPSNVGRNLFNIA------QGTQFV 615
SS+S P+ +S N++FP E+ V P VG ++ N A G +
Sbjct: 62 SSSSTAADTSPSTNASNTNISFPEQEHKDELFMNVEPKGVGSSMDNHAITIHHSTGNGLL 121
Query: 616 RPSYDTGFPYDTNMYPTQYYPNNITAYYDSGENQGIQNHNPNNYNTN 756
R S+D + + + + +NI+ + + + Q +NP++ NT+
Sbjct: 122 RSSFDHDYRQKNSPRNSIHRLSNISIGNNPIDFESSQQNNPSSLNTS 168
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 26.6 bits (56), Expect = 6.7
Identities = 30/113 (26%), Positives = 47/113 (41%)
Frame = +1
Query: 316 FEKTQYITGIDRRELAQKLGIGEKCIKIWFQNRRMKNKRKSSESSDSYTEAECSSTSDTP 495
FE +Y+ REL ++ G+ R + SS+ S E S T + P
Sbjct: 111 FESREYVF----RELLREHGLDPVLANTKLSQRHSASFFPSSQEP-SIPENPSSLTGEKP 165
Query: 496 KPVPARISSAVNMTFPHNEYVLPSNVGRNLFNIAQGTQFVRPSYDTGFPYDTN 654
+ ARI SA+N F ++ + PS++ L + V S + P D N
Sbjct: 166 H-LYARIDSAINEPFTPSDRLSPSSL-VPLLKLPALDHAVSSSSSSDLPSDPN 216
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +2
Query: 503 SLQEYLVQLT*H----FHITNMFYLVMLEGICLILLKVLNSSD 619
SL ++VQ T H F+IT+ F+++ L + LIL + L+ S+
Sbjct: 300 SLSGFIVQYTPHMYYVFYITSTFWIIYLLYVWLILPESLDVSE 342
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 575 PTLLGKTYSLCGNVMLTALDILAGTGFGVSDVDEHSASVYE-SLDSEDFLLFFIL 414
P L+GK Y C + TAL L G +V + A+++ + S +FL+ I+
Sbjct: 303 PWLVGKLYKWCKEEVFTALGGLVHEGVSRREVAQVMATLFTIHIASMEFLIAEII 357
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 211 PENVTKNESSKPRKYKSKRVRTSFTWDQQLMLEETFEK 324
PE K S P+KYKS RV +++ +++E FE+
Sbjct: 299 PEEYLKQSSDFPKKYKSLRVVPAYS----NLIKEKFER 332
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 422 RTKENLQSLVIRILKQ-NAHLHLILQNLSLQEYLVQLT*HFHITNMFYLVMLEGICLILL 598
R K+ L ++ +K+ + ++L + L E +Q+ + N F +GIC++LL
Sbjct: 906 RVKKALPNVTSEEVKEFQKNKKMVLDGIELVEGDLQIIRSVEVKNEFLKSNTDGICIVLL 965
Query: 599 KV 604
+
Sbjct: 966 DI 967
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 493 PKPVPARISSAVNMTFPHNEYVLPSNVGRNLFNIAQGTQFVR-PSYD 630
P P+ ++ A N+ PH+ +P + F +++ VR PS+D
Sbjct: 166 PTPLNKFLAGAENVDIPHSLRPVPRREHSSQFQVSEKRTLVRLPSFD 212
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 427 KRKSSESSD--SYTEAECSSTSDTPKPVPARISSAV 528
K+K +ESS+ ++TE + SS+ P+P SS +
Sbjct: 15 KKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQI 50
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 412 RRMKNKRKSSESSDSYTEAECSSTSDTPKPVPARISSAVNM 534
++ K K+KS++ S E E SST D + + + NM
Sbjct: 116 KKKKKKKKSADLSAFEKELEASSTGDATSDLSKQTFDSENM 156
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 8.9
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Frame = +1
Query: 367 KLGIGEKCIKIWFQNRRMKNKRKSSESSDSYTEAECSSTSDTPKPVPARISSAV--NMTF 540
KL IGE CI ++ ++ K S + + K VP I S V N++
Sbjct: 311 KLNIGEFCISLYLIKLKLSGKELPKVLPSSML-SSVAPLMQKSKSVPTSIPSVVPANISS 369
Query: 541 PH-NEYVLPSNVGRNLFNIAQGTQFVRPSYDTGFPYDTNMYPTQYYPNNITAY 696
P+ N + P+ G + + GT+ + S D P+ + P Q+ +N T +
Sbjct: 370 PNPNPTLAPNPTGPS--RVTSGTEDLL-SLD-ATPFSPTLAP-QHTSSNATKH 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,397,041
Number of Sequences: 5004
Number of extensions: 92171
Number of successful extensions: 289
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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