Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G06
(1184 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 118 2e-27
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 118 2e-27
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 101 3e-22
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 96 1e-20
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 93 5e-20
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 92 1e-19
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 85 2e-17
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 81 2e-16
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 79 2e-15
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 79 2e-15
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 79 2e-15
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 67 4e-12
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 48 3e-06
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 33 0.059
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 2.9
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 27 6.7
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 8.9
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 8.9
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 8.9
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 8.9
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 8.9
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 118 bits (283), Expect = 2e-27
Identities = 54/147 (36%), Positives = 90/147 (61%), Gaps = 1/147 (0%)
Frame = +1
Query: 262 ATRXLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 438
A + + +EL D+ + S V + ++ WQ I+ P + PY G F + I+FP +Y
Sbjct: 2 ALKRINRELADLGKDPPSSCSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 439 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 618
PFKPPK++F T+IYHPNI+ G +CL I+ + W PA +V+ ++ +L+ DP P+ PL
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDIL-RDQWSPALTISKVLLSICSLLTDPNPDDPL 119
Query: 619 RAELAEEFLKDRKKFTKNAEEFTKKHS 699
E+A + DR ++ +A E+T+K++
Sbjct: 120 VPEIAHVYKTDRSRYELSAREWTRKYA 146
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 118 bits (283), Expect = 2e-27
Identities = 53/149 (35%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Frame = +1
Query: 259 AATRXLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAE 435
+++R L KE +D+R+ + R VD+ N+ W + P + Y G F + FP +
Sbjct: 7 SSSRRLTKEYSDLREHPIPDIRVNLVDD-NLFHWACTALGPSDSVYAGGKFHFSLKFPLD 65
Query: 436 YPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHP 615
YPF+PP I F T+IYHPN D +G VCL I+ + +KP+ K V++ ++ L+ +P P+ P
Sbjct: 66 YPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDP 125
Query: 616 LRAELAEEFLKDRKKFTKNAEEFTKKHSE 702
L A +AE++ DR F K A ++ ++ ++
Sbjct: 126 LVASIAEQYRNDRPSFDKIARDYVEQFAK 154
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 101 bits (241), Expect = 3e-22
Identities = 48/147 (32%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Frame = +1
Query: 265 TRXLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYP 441
+R + KEL D++Q + +++ +I +G+ P+ PY G F ++I P +YP
Sbjct: 6 SRRIAKELADVQQDKQAGIQVWTIND-DISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYP 64
Query: 442 FKPPKISFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 618
F+PPK++F TKIYHPN+ + G +CL I+ + W P + +L +L+ PEP +P
Sbjct: 65 FRPPKMNFDTKIYHPNVSSQTGAICLDILK-DQWSPVYTMKSALISLQSLLCTPEPSNPQ 123
Query: 619 RAELAEEFLKDRKKFTKNAEEFTKKHS 699
A++A+ +L++ ++F + A E+T ++
Sbjct: 124 DAQVAQVYLQNYQQFVRTAREWTSSYA 150
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 95.9 bits (228), Expect = 1e-20
Identities = 44/161 (27%), Positives = 89/161 (55%), Gaps = 13/161 (8%)
Frame = +1
Query: 259 AATRXLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAE 435
A+ + L+K+L +I+++ + F VD+ +I W+ +I+ P++ Y G F ++FP +
Sbjct: 5 ASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQD 64
Query: 436 YPFKPPKISFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQAL 579
YP PPK+ F T+I+HPN+ G+VC+ I+ + E W P + ++ ++
Sbjct: 65 YPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISV 124
Query: 580 VALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSE 702
+++++ P E P + A+EF ++ ++F K ++ E
Sbjct: 125 ISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIE 165
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 93.5 bits (222), Expect = 5e-20
Identities = 40/108 (37%), Positives = 66/108 (61%)
Frame = +1
Query: 376 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATK 555
P Y G F +E+ P EYP PP + F TKIYHPN+D+ G++CL + ++W PA +
Sbjct: 41 PQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLK-KDWSPALQ 99
Query: 556 TDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHS 699
V+ ++ AL+ P P+ PL ++A+ + ++ + NA E+TKK++
Sbjct: 100 IRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 92.3 bits (219), Expect = 1e-19
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Frame = +1
Query: 259 AATRXLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGA-FRIEINFPAE 435
+ T+ L+ EL + S +SN+L W G I + Y +G F+I ++FPA
Sbjct: 28 SVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPAN 87
Query: 436 YPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHP 615
YP+ PP I F + ++HPN+D G +CL I+ + W ++ +L +L+ +P P
Sbjct: 88 YPYSPPTIIFTSPMWHPNVDMSGNICLDILK-DKWSAVYNVQTILLSLQSLLGEPNNASP 146
Query: 616 LRAELAEEFLKD 651
L A+ AE + KD
Sbjct: 147 LNAQAAELWSKD 158
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 84.6 bits (200), Expect = 2e-17
Identities = 37/141 (26%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Frame = +1
Query: 262 ATRXLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 438
A R L ++ ++Q V + N++ W +I+ P + P+ G F++ ++F +Y
Sbjct: 5 ARRRLMRDFKRMQQDPPAGVSASPVSD-NVMLWNAVIIGPADTPFEDGTFKLVLSFDEQY 63
Query: 439 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 618
P KPP + F + ++HPN+ G++CL I+ W P ++ ++ +L+NDP P
Sbjct: 64 PNKPPLVKFVSTMFHPNVYANGELCLDILQ-NRWSPTYDVAAILTSIQSLLNDPNNASPA 122
Query: 619 RAELAEEFLKDRKKFTKNAEE 681
AE A+ +++K++ + +
Sbjct: 123 NAEAAQLHRENKKEYVRRVRK 143
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 81.4 bits (192), Expect = 2e-16
Identities = 38/157 (24%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Frame = +1
Query: 262 ATRXLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 438
A R L KE ++ ++G +E + TW LI PD P+ G + + FP++Y
Sbjct: 6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDY 65
Query: 439 PFKPPKISFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQALV 582
P PP + F+ + +HPN+ + G VC+ I+ S+E W P ++++ +++
Sbjct: 66 PLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVM 125
Query: 583 ALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKK 693
+++ +P E + + + +DR+++ + +K
Sbjct: 126 SMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 78.6 bits (185), Expect = 2e-15
Identities = 45/139 (32%), Positives = 63/139 (45%)
Frame = +1
Query: 274 LQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKPP 453
+QK++ D+ S + N+L + I PD Y G F+ I YP PP
Sbjct: 28 IQKDVTDLEIPSTMSTSWPDPIKLNVLHLE--IRPDEGYYKGGKFKFRIQIDDNYPHDPP 85
Query: 454 KISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELA 633
K+ KIYHPNID +G VCL I+ ++W P + ++ L L P E PL E A
Sbjct: 86 KVKCLNKIYHPNIDIEGNVCLNIL-RQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAA 144
Query: 634 EEFLKDRKKFTKNAEEFTK 690
+ KD + F K
Sbjct: 145 ADLHKDPQGFASRVRTAMK 163
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 78.6 bits (185), Expect = 2e-15
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Frame = +1
Query: 346 NILTWQGLIVPDNPP--YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLP 519
+++ W+ + +P P + G +++ + FP EYP +PPK F ++HPN+ G VCL
Sbjct: 37 DLMNWK-VGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLS 95
Query: 520 IIS-AENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKH 696
I++ E WKPA Q++ + L++DP P + E F KD+ ++ K +++
Sbjct: 96 ILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAREN 155
Query: 697 S 699
+
Sbjct: 156 A 156
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 78.6 bits (185), Expect = 2e-15
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Frame = +1
Query: 376 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIISAENWKPAT 552
P PY+ G +++ + P+EYP+K P I F +I+HPNIDE G VCL +I+ + W P
Sbjct: 39 PSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVIN-QTWSPMF 97
Query: 553 KTDQVIQA-LVALVNDPEPEHPLRAELAEEFLKDRKKFTKNAEEFTKKHSEKRPTD 717
+ + L L+ P PL E A L++ + ++ +++ K D
Sbjct: 98 DMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYANKEDAD 153
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 67.3 bits (157), Expect = 4e-12
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Frame = +1
Query: 334 VDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNID-EKGQ 507
V + ++ W+ +I P PY G + ++I+ YP PP + F+TKI HPNI G+
Sbjct: 29 VTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGE 88
Query: 508 VCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAE 636
VC+ I+ +W PA A+++L+++ + PL + A+
Sbjct: 89 VCMDILKT-HWSPAWSLQSACLAIISLLSNYDASSPLNVDAAK 130
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 48.0 bits (109), Expect = 3e-06
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +1
Query: 262 ATRXLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 438
A + L KE ++++ ++ D + NIL W +I P + PY G + + FP +Y
Sbjct: 6 AYKRLMKEYLALQKNPVELV-DAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDY 64
Query: 439 PFKPPKISFKTKIYHPNIDEKGQVCLPI--ISAENWKPATKTDQVIQALVALVNDPE 603
PFKPP I T ++CL ++W P+ ++ LV+ + E
Sbjct: 65 PFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDE 119
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 33.5 bits (73), Expect = 0.059
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 337 DESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNID-EKGQV 510
D+ + W I+ P + + + ++I+ A YP PP ++F ++I P +D E G+V
Sbjct: 34 DDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKV 93
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 501 LFINVRVVNLCFETNFRGFEWVFCW 427
LF+N V +C+ N+ GF + FCW
Sbjct: 41 LFLNYVVDIVCYVKNYNGFSF-FCW 64
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 6.7
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = +1
Query: 265 TRXLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPP--YNKGAFRIEINFPAEY 438
++ + ELN+ S K + + ES++ QG + +NPP N G + F +
Sbjct: 2 SQTINSELNENATSQCKEDLKVSLSESDLRDSQGQLGIENPPKCNNSGNHSDNLGFIEQS 61
Query: 439 PFKPPKISFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVI 570
P+ K P++ D K LPI + + K A + ++
Sbjct: 62 ETVHPE---NEKALTPDLRDTKIHTSLPITTPFSKKRAREAKNIL 103
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 343 SNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQ 507
S++ T + LI P PP K E E F+P + ++ I P +D + +
Sbjct: 566 SSMQTIESLIHPRFPPLQKHLSPSEFENTFESRFEPVSLENQSHISPPQVDSQSE 620
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 460 SFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVI 570
S + I+H N D+ V A +W+ A KTD V+
Sbjct: 460 SMEAPIFHVNGDDVEAVTFICQLAADWRKAFKTDVVV 496
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 469 TKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVN 594
T + HP+ D + CL +I NW+ + + +A++A +N
Sbjct: 101 TGLEHPSTDVE-IFCLHLIRRANWEKKEIGEPLFEAIMACIN 141
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 638 NFSKIGRNLQRMQKNLPKNTVKNGLQIKYT 727
NF N+ R K L +T +NG++ KYT
Sbjct: 413 NFKTEDTNVLRYWKTLALSTCENGIEDKYT 442
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 476 IFVLKLIFGG--LNGYSAGKLISMRKAPLL*GGLSGTIRPC 360
+ VL+++ G LN +S+ KLI PLL G +R C
Sbjct: 450 LLVLQMLCGAHVLNKFSSLKLIMTHVIPLLPGSYQDLVRRC 490
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,030,221
Number of Sequences: 5004
Number of extensions: 82768
Number of successful extensions: 223
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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