Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_G04
(1170 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 62 2e-10
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 55 2e-08
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 51 4e-07
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 49 1e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 47 4e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 1e-05
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 42 1e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 7e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.003
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.004
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 37 0.005
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces... 36 0.008
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.014
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 35 0.025
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.033
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 34 0.033
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 32 0.13
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.23
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 31 0.23
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.41
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 1.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 1.2
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 1.6
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 28 2.9
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 28 2.9
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.8
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 5.0
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 6.6
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 6.6
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 61.7 bits (143), Expect = 2e-10
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Frame = +1
Query: 427 TITTGPTKLLVSNLDFGVSDSDIKELF-SEFGILKSASVHYDRSGRSLGTADVVFERKAD 603
++ + +K++VSNL V+++ +KELF G K S+ Y +GRS G A ++F R D
Sbjct: 49 SVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGD 108
Query: 604 AVKAMKQYNGVPLDG-RAMNIQLATSEINTLRPEARNRIGGASVGGTIRNN 753
A +A +QY G +DG R M +++ L A ++ T N
Sbjct: 109 ATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNASATASKN 159
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 54.8 bits (126), Expect = 2e-08
Identities = 29/109 (26%), Positives = 51/109 (46%)
Frame = +1
Query: 448 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQY 627
+L VSN+ F ++D D+K +F FG ++ + D RS G + + A A+++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 628 NGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPKRGGGG 774
NG L GR M + L + T + + ++ R+ P + GG
Sbjct: 401 NGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQERSQPSQRNGG 449
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.8 bits (116), Expect = 4e-07
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 630
+ V NL + SD ++ +LF++ G + A + Y+ +GRS G V FE + DA ++++ N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 631 GVPLDGRAMNIQLA 672
G GR + + A
Sbjct: 342 GYRYGGRPLQLSYA 355
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 466 LDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLD 645
L + V D+K+LF + G + A + ++ GRS G VV +A+ A++ +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 646 GRAMNIQL 669
GR + ++L
Sbjct: 250 GRTLEVRL 257
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 49.2 bits (112), Expect = 1e-06
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Frame = +1
Query: 280 SNRSGGVQRGRNRGGITKSTNYSRGDVNST-----WKHDMFN--DFGERKLQRNSGTITT 438
S R G R + +T + + NS+ W+HD+ D R +
Sbjct: 23 SRRRGSQNRISKKSRLTYKFKRASKEHNSSPDDGPWQHDLDQEQDAHPRTTHLQKRQHSE 82
Query: 439 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 618
+ V NL + V + D+ LF F ++ ++YDR+GRS G+ DV FE DA A
Sbjct: 83 NRFGVRVENLHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSEGSCDVYFETSQDAEDAQ 141
Query: 619 KQYNGVPLDGRAMNI 663
K L G + I
Sbjct: 142 KTLQSTNLKGSEIQI 156
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 47.2 bits (107), Expect = 4e-06
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 627
+ +S L + +SDI+ F+ +G ++ V ++ +G+S+G A VVFER+ D A K
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 628 NGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGT--IRNNPKRGGG 771
G+ L+GR + + + T++ ++GG +GG + P+R G
Sbjct: 162 AGLMLNGRRIVVDVERG--RTVKGWLPRKLGG-GLGGRHYTKERPRRERG 208
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 45.6 bits (103), Expect = 1e-05
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQY 627
+ V L + V D + + F E+G + A V D +SGRS G V FE +A KA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP-EAAKAAVAA 323
Query: 628 NGVP-LDGRAMNIQLATSEINTLRPEARNRIG 720
NG +DGR +N+ L+ +P A+ R G
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAG 355
Score = 33.5 bits (73), Expect = 0.058
Identities = 25/53 (47%), Positives = 28/53 (52%)
Frame = +1
Query: 202 PRIGGGAGSKFDANKXTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 360
PR GGG S+ GRGG G R GG RGR RGG +S N +RG V
Sbjct: 443 PRTGGG--SRGGRGGFGGRGGFGG-RGGFGGG--RGRGRGG-ARSGNPNRGSV 489
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 42.3 bits (95), Expect = 1e-04
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +1
Query: 421 SGTITTGPTKLLVSNLDFGV--SDSDIKELFSEFGILKSASV-HYDRSGRSLGTADVVFE 591
+ T T P L V NLD + + ++ELFS+FG +KS ++ Y + S G V F
Sbjct: 411 TSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
Query: 592 RKADAVKAMKQYNGV 636
+AV+A+ NGV
Sbjct: 471 HPFEAVQAINTLNGV 485
Score = 32.3 bits (70), Expect = 0.13
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Frame = +1
Query: 400 ERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGT-- 573
E+ ++N + + V NL SD+ ELF FG + + +S +
Sbjct: 5 EKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKS 64
Query: 574 ----ADVVFERKADAVKAMKQYNGVPLDGRAMNIQ 666
A + FE K A A+ NG G + ++
Sbjct: 65 PTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.9 bits (89), Expect = 7e-04
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 448 KLLVSNLDFGVSDSD-IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQ 624
+L++ NL + + ++ FS+FG ++ + GR G A V + + A +AM
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 625 YNGVPLDGRAMNIQLATSE 681
NG +DGR + + A S+
Sbjct: 168 LNGTEIDGRPIAVDWAVSK 186
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.9 bits (84), Expect = 0.003
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEF-GILKS---ASVHYDRSGR--SLGTADVVFERKADAVK 612
+ V NL+F + +++F G L + A R G+ S+G V F+ KA AV
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 613 AMKQYNGVPLDGRAMNIQLA 672
AM NG LDG + I+L+
Sbjct: 681 AMHAMNGFVLDGHKLEIKLS 700
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGIL 525
LLV N +G S ++ LFS FG L
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGEL 532
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.9 bits (84), Expect = 0.003
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 627
+ + NLDF +++ DI +FSEFG ++ D+ +G+S G A + +E + V A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 628 NGVPLDGRAMNI-QLATSEINTLRPEARNRIGGASVGGTI 744
V L R + + +A+ ++ E N + G ++
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEKEPANLVPLGESGSSL 132
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.5 bits (83), Expect = 0.004
Identities = 20/87 (22%), Positives = 41/87 (47%)
Frame = +1
Query: 403 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADV 582
R+ Q + T + + NLD +++ + +LF +FG + S S+ D++ + G V
Sbjct: 247 RERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFV 306
Query: 583 VFERKADAVKAMKQYNGVPLDGRAMNI 663
+ A KA+ + N G+ + +
Sbjct: 307 NYANHECAQKAVDELNDKEYKGKKLYV 333
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +1
Query: 493 IKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 672
++ LF +G K V ++ R G A VVF+ +A +A+K G PL G+ M IQ +
Sbjct: 46 LEHLFGSYG--KVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYS 103
Query: 673 TSE 681
S+
Sbjct: 104 KSK 106
>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 183
Score = 36.3 bits (80), Expect = 0.008
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +1
Query: 439 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 618
GPT +++ NL G S D+ FG + + V+ D G+ A V F A A + +
Sbjct: 98 GPTNVVIENLAPGTSSDDVAATLLNFGEILNCQVN-DSQGKV--RASVRFSTLASAQQVV 154
Query: 619 KQYNGVPLDG 648
++ +GV DG
Sbjct: 155 QKLDGVTADG 164
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.5 bits (78), Expect = 0.014
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 627
L V L+ D D++ +FS FG + S V D+ +G SL A + F+ K KA +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 628 NGVPLDGRAMNIQLATS 678
V +D +++ + S
Sbjct: 306 QNVLIDDSRIHVDFSQS 322
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.7 bits (76), Expect = 0.025
Identities = 17/61 (27%), Positives = 35/61 (57%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 630
L + NL F ++ ++ +LF +G ++ + + ++ GTA VV+E DA +A ++ +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ--IRLGNTVQTRGTAFVVYENVQDARRACEKLS 71
Query: 631 G 633
G
Sbjct: 72 G 72
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 34.3 bits (75), Expect = 0.033
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFG-ILKSASVHYDRSGRSLGTADVVFERKADAVKAMK 621
L V NLDF +D+D+KE F + G I + + ++ +G+ G V F +KAM+
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 34.3 bits (75), Expect = 0.033
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAMKQYN 630
L +SN+D VS++DIK LF + + SA V G S A + ++D A +
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFI-SARVLRCVDGTSTSIAFIWLANESDIQNAQVEMQ 133
Query: 631 GVPLDGRAMNIQLATSEINT 690
G R++ + S+ NT
Sbjct: 134 GAFCLKRSILVHSVKSDKNT 153
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 32.3 bits (70), Expect = 0.13
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 199 KPRIGGGAGSKFDANKXTGRGGGAGFRSNRSG--GVQRGRNRGG 324
KP+ G K N GRGG GFR R G G G +RGG
Sbjct: 118 KPKTVGPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGG 161
Score = 27.1 bits (57), Expect = 5.0
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +1
Query: 214 GGAGSKFDANKXTGRGGGA--GFRSNRSGGVQ---RGRNRGG 324
GG+ F N G GGG+ GF GG + RG +RGG
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.23
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 627
L VS + + + +++++FS+FG + + + + S G + F +A A+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 628 NGVPLDGRAMNIQLA 672
N GR +N+Q A
Sbjct: 163 NSQEFYGRVLNVQKA 177
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 31.5 bits (68), Expect = 0.23
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLGTADVVFERKADAVKAMKQY 627
L V+NL + ++++LF FG ++ + D+ +GR+ G A V + + A+KA +
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 628 NG 633
+G
Sbjct: 264 DG 265
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 30.7 bits (66), Expect = 0.41
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Frame = +1
Query: 442 PTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKA------ 600
PT++ VSN+ V+ ++ F FG + + + +G SLG + F++++
Sbjct: 93 PTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAA 152
Query: 601 -DAVKAMKQYNGVPLDGRAMNIQL 669
A A++Q NG+ G+ +++ L
Sbjct: 153 HSAKIAVQQANGLRFSGKPLSVVL 176
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 29.1 bits (62), Expect = 1.2
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLGTADVVFERKADAVKAMKQY 627
++V+ + ++ +++LF++FG +K+ ++ D R+G G A + + A KA+ +
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 628 NGVPLD 645
N LD
Sbjct: 72 NLSLLD 77
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.1 bits (62), Expect = 1.2
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +1
Query: 436 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKA 615
T T L +SNL ++SDI LF I+ S V D +S G + + A
Sbjct: 381 TESTNLYISNLPLHWNESDISTLFKPSKII-SNRVLRDSKEQSRGVGFARMQDRKTAEDI 439
Query: 616 MKQYNGVPLDGRAMNIQL 669
+ ++N LD +Q+
Sbjct: 440 INKFNNFVLDPALPPLQI 457
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.7 bits (61), Expect = 1.6
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKE----LFSEFGILKSASVHYDRSGRSLGTADVVFERKADAVKAM 618
L V+NL+ ++ +D++ LFS +G + + ++ + G A VVF + A AM
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTV--VDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 619 KQYNGVPLDGRAMNIQLATSE 681
K G+ M IQ A S+
Sbjct: 64 KALKNFIFFGKEMKIQYAHSK 84
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 27.9 bits (59), Expect = 2.9
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 217 GAGSKFDANKXTGRGGGAGFRSNR-SGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 393
G GS F +N T G G+G +N SGG+ N T ST G + K F+
Sbjct: 282 GGGSAFGSNT-TNTGFGSG--TNNASGGLFGQNNNTTSTPSTGLFGGSTFNQQK-PAFSG 337
Query: 394 FGERKLQRNSGTIT 435
FG N+GT T
Sbjct: 338 FGSTTNTTNTGTGT 351
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 463 NLDFGVSDSDIKELFSEFGILKSASVHY 546
+LD V D DI+ LFS F I KS +Y
Sbjct: 473 SLDETVCDKDIQALFSIFNINKSVDQYY 500
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 451 LLVSNLDFGVSDSDIKELFSEFGILK 528
L VSNL G S S I LFS +G +K
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVK 27
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 223 GSKFDANKXTGRGGGAGFRSNRSGGVQRGRNRGG 324
G + + N+ GGG G ++N GG + G + GG
Sbjct: 72 GGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGG 105
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 6.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 712 RIGGASVGGTIRNNPKRGGGG 774
R GGAS GG R++P+ GG
Sbjct: 882 RRGGASAGGVSRDSPRYSRGG 902
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.6 bits (56), Expect = 6.6
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +1
Query: 499 ELFSEFGILKSASVHYDRSGRSLGT---ADVVFERKADAVKAMKQYNGVPLDGRAMNIQL 669
E F ++G + +++ + S + ++RK DA +A+ +G DGR +
Sbjct: 140 EYFGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASY 199
Query: 670 ATSEINT 690
T++ T
Sbjct: 200 GTTKYCT 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,560,986
Number of Sequences: 5004
Number of extensions: 64808
Number of successful extensions: 227
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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