Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G02
         (1181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0003 - 14989160-14989445,14989673-14989807,14991418-149915...    31   2.3  
03_02_0242 - 6742342-6742803                                           30   3.1  
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579...    30   3.1  

>01_04_0003 -
           14989160-14989445,14989673-14989807,14991418-14991508,
           14991571-14991712,14991924-14992403,14992610-14993548
          Length = 690

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 417 CWAWTRRTSAPACSPRAARCWRSSTLIKQLNGV 515
           C   TRR+S+ + SP     W SST ++ +NG+
Sbjct: 624 CQICTRRSSSSSWSPADLAKWLSSTALRGMNGI 656


>03_02_0242 - 6742342-6742803
          Length = 153

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 423 AWTRRTSAPACSPRAAR-CWRSSTLIKQLNG 512
           AW+  +S PAC PRAAR  W + T   Q  G
Sbjct: 83  AWSSSSSPPACPPRAARLLWGALTRAVQRPG 113


>02_03_0052 -
           14456925-14457176,14457277-14457437,14457843-14457914,
           14458105-14458221,14458310-14458322,14458917-14458946,
           14459837-14460010,14460276-14460417,14460731-14460792,
           14461047-14461643
          Length = 539

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 375 PTEPRRRKSWTSWRCWAWTRRTSAPACSP 461
           P  PRRR  W+ WR   W RR    ACSP
Sbjct: 40  PPLPRRRM-WSGWR---WGRRRGRGACSP 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,183,182
Number of Sequences: 37544
Number of extensions: 192994
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3619930760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)