Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G02
         (1181 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.43 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   3.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   6.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 320 PRPPQRVEAQPEAKLLPKP 376
           P PP+R+   P   LLP+P
Sbjct: 639 PLPPKRIRKMPSMPLLPRP 657


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
 Frame = +2

Query: 317 QPRPPQ---RVEAQPEAK 361
           QPRPP    R EA+PEAK
Sbjct: 247 QPRPPHPRLRREAKPEAK 264


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 190 VQRLLQVARQAARGAGDLS 134
           + R L + R+A RGA DLS
Sbjct: 14  IARSLSLDRRARRGAADLS 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,549
Number of Sequences: 438
Number of extensions: 2224
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40247334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)