Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G01
         (1173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu...    33   0.058
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    29   1.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   8.8  

>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
           10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 85

 Score = 33.5 bits (73), Expect = 0.058
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 143 FKRPSPFALAVAGGTFFFESTFELVSQSIFENLNKGKLWKDIKHKYEN 286
           F+R S F   +    FF +  F++ + S+++  N G  W ++K ++ N
Sbjct: 29  FRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 210 SNVLSKKNVPPATAKANGDGRLKTGRLNGDHTD 112
           SN  S+K VPP+  +    G   T R   D+TD
Sbjct: 455 SNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTD 487


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 149  RPSPFALAVAGGTFFFESTFELVSQSIFENLN 244
            R +PF  A+  G +       L SQS+ E LN
Sbjct: 1619 RDAPFLAAMRNGHWVLLDELNLASQSVLEGLN 1650


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,015
Number of Sequences: 5004
Number of extensions: 31212
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)