Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_G01
         (1173 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    30   2.7  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   6.3  
AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    29   6.3  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   8.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   8.4  

>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
 Frame = +2

Query: 848  PXKGXXPXKGRXXGFXXXPPPP--XXXXKXXPXXXGGXPXGXXKXXGFPXXXPXGPPXP 1018
            P  G  P  G   G+   PPPP      +  P   GG P         P     GPP P
Sbjct: 1555 PMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGPPPP 1613


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
            protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 19/74 (25%), Positives = 19/74 (25%)
 Frame = +2

Query: 905  PPPXXXXKXXPXXXGGXPXGXXKXXGFPXXXPXGPPXPXXXXXXXXXXXPXGXGGXXXXX 1084
            PPP       P   GG P       G     P   P             P G GG     
Sbjct: 351  PPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGGPGGYG 410

Query: 1085 XXXPXGXGXPPXXG 1126
               P G G P   G
Sbjct: 411  PPPPGGPGAPGSYG 424


>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
            50 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 21/79 (26%), Positives = 21/79 (26%), Gaps = 3/79 (3%)
 Frame = +2

Query: 902  PPPPXXXXKXXPXXXGGX--PXGXXKXXGFPXXX-PXGPPXPXXXXXXXXXXXPXGXGGX 1072
            P PP       P    G   P G       P    P GPP P             G GG 
Sbjct: 170  PGPPGPDGNAGPAGPAGAAGPDGEGAGYAEPGPAGPAGPPGPDGQPGAPGPDGQPGAGGT 229

Query: 1073 XXXXXXXPXGXGXPPXXGG 1129
                   P G   PP   G
Sbjct: 230  TSTNQPGPPGPAGPPGPAG 248


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical protein
            C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = +2

Query: 866  PXKGRXXGFXXXP--PPPXXXXKXXPXXXGGXPXGXXKXXGFPXXXPXGPP 1012
            P  GR  G    P  PPP    +  P   GG P        +P   P  PP
Sbjct: 302  PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA binding
            protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
 Frame = +2

Query: 866  PXKGRXXGFXXXP--PPPXXXXKXXPXXXGGXPXGXXKXXGFPXXXPXGPP 1012
            P  GR  G    P  PPP    +  P   GG P        +P   P  PP
Sbjct: 312  PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,759
Number of Sequences: 27780
Number of extensions: 278207
Number of successful extensions: 542
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3203378606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)