Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_F24
(1106 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 31 0.29
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 30 0.66
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 29 1.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 28 2.7
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 3.5
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 27 4.7
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 27 4.7
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb... 27 4.7
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 6.2
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 6.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 6.2
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 8.2
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 31.1 bits (67), Expect = 0.29
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +1
Query: 538 INQHCELTNNIQLRDMVDSVSSNLIKMIKKLNQWYQQKIYEDYPKNITNSQYTNIKFYYF 717
++ + EL ++ ++ + S+ +K+I+ +K D K + N Y
Sbjct: 842 VSDNWELNEGLE-KETIQSICLFCLKVIRT------KKEELDGHKKLVNPNTKVFCLYLV 894
Query: 718 NLSYNAVTNIILPLSKTENFN-ESFIERTFEIAKANKIGTHLKQIEELYYEML 873
+ SY+ ++N+ L TE SF+ + F K G+H + E ++YE+L
Sbjct: 895 SFSYSIISNLFLGCETTERAQLASFLLKEFLNLKN---GSHFEGYERVFYELL 944
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 29.9 bits (64), Expect = 0.66
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +1
Query: 838 LKQIEELYYEMLEWIKRINLSE 903
+K ++E+YYE L+WIK ++ E
Sbjct: 446 VKDVDEVYYESLKWIKNNDVDE 467
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 709 YYFNLSYNA--VTNIILPLSKTENFNESFIERTFEIAKANK 825
Y+ N + N +TN + L EN NESF E+ + K NK
Sbjct: 417 YFHNSNENGDLITNSLHGLDFLENANESFPEQMYPFIKHNK 457
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 649 KIYEDYPKNITNSQYTN---IKFYYFNLSYNAVTNIILPLSKTENFNESFIERTFEIAKA 819
++YED + Y + IKF + Y + L L ++ FN+S++++ F+
Sbjct: 804 QLYEDNELTDALNNYLDLFGIKFAFILYDYFVENGMALELLNSDRFNKSYLKQFFKSRDY 863
Query: 820 NKI 828
N+I
Sbjct: 864 NQI 866
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 3.5
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Frame = +1
Query: 553 ELTNNIQLRDMVDSVSSNLIKMIK-KLNQWYQQKIYEDYPKNITNSQYTNIKFYYFNLSY 729
EL+NN L+ ++M++ +L++ K + Q + +
Sbjct: 504 ELSNNYDLQGAAVQYLQRRLRMVEDELHEAINSKNVQQSRSEELEQQISKLTDNLQEYR- 562
Query: 730 NAVTNIILPLSKTENFNESF----IERTFEIAKANKIGTHLKQIEELYYEMLEWIKRINL 897
N V + L L K++ NE +E+ EIA K THL + +E ++ ++ +L
Sbjct: 563 NTVRELKLDLEKSKKKNEDLSKLEVEKVEEIANLKKELTHLAKQQEFGFKYVQEFSNEDL 622
Query: 898 SEXTXKQNNXSF 933
+ N ++
Sbjct: 623 QGKLIEANEKNY 634
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 472 EECISFDRNKDIAWTNKSLSKYINQHCELTNNIQLRDMVDSVS---SNLIKMIKKLNQWY 642
++ S N++ N S +N+ +L N ++L + + + L K+I+K+N+
Sbjct: 13 QDAYSVRENENELHINNSGMSELNKKLQLPN-VELSTLSHTQEQEFNELNKLIRKINELQ 71
Query: 643 QQKIYEDYPKNITNS 687
+ + ED K +TN+
Sbjct: 72 EFYLLEDLAKPVTNA 86
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 4.7
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 6/133 (4%)
Frame = +1
Query: 499 KDIAWTNKSLSKYINQHCELTNNIQLRDMVDSVSSNLIKMIKKLNQWYQQKIYEDYPKNI 678
K+ A + S N EL N + LRD +S + + L W Q + +
Sbjct: 190 KEPAVASSESSDCFNDMQELNNIVDLRDYSNSRFQQNRLLDRNLKGWIQGESEKALKGRR 249
Query: 679 TNSQYTNIKFYYFNLS------YNAVTNIILPLSKTENFNESFIERTFEIAKANKIGTHL 840
T + + Y + S ++ T I+ K EN + R + +I +
Sbjct: 250 TTKRNDKENYNYPDFSNDNELLFSLATLIVENNPKKENIIPKYYLRYLQRLSRTEINKEI 309
Query: 841 KQIEELYYEMLEW 879
+IE+L E++++
Sbjct: 310 IEIEKLELEVVQF 322
>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 116
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 909 SXFTKIYAFNPL*HFVVQFFYLLKVGAN 826
S F ++ F+P F+V FFYLL V N
Sbjct: 27 SFFFELRLFSPQCLFIVYFFYLLHVRIN 54
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 6.2
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 607 LIKMIKKLNQWYQQKIYEDYPK 672
+++ I++L Y+Q +YE+YP+
Sbjct: 303 VLRKIQQLKDSYEQSLYEEYPQ 324
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/60 (20%), Positives = 29/60 (48%)
Frame = +1
Query: 244 CKITMESVNTLKRMAXIDFNKPVAVXVTIINDXALEFVSNWVTDYKIXNISNNFPIENNT 423
CK + S +++ + + ID++ +T + FVS + +++N F + ++T
Sbjct: 116 CKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCRARFVSKDTKSFSYSSLANTFSLISST 175
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +1
Query: 538 INQHCELTNNIQLRDMVDSVSSNLIKMIKKLNQWYQQKIYEDYPKNITNSQYTNIKFYYF 717
+N + + I L M+ + LIK + +K E YP I N N+ Y
Sbjct: 1706 VNINSDDIAQISLTPMMVTDVHRLIKFYLTNQENNIEKRPEGYPYVILNQTGYNLSIQYG 1765
Query: 718 NLSYNAVTNIILPLSK 765
NL+ + + ++ LP K
Sbjct: 1766 NLNSSEMQSLSLPSGK 1781
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 439 NYAHERNPFPREECISFDRNKDIAWTNKSLSKYINQHC 552
NY++E ++E + D++K A KY+ HC
Sbjct: 674 NYSNETITLKKDEIV-LDKSKSYACCTSESHKYVQGHC 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,428,707
Number of Sequences: 5004
Number of extensions: 65708
Number of successful extensions: 205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 585701508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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