Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F24
         (1106 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590...    33   0.40 
10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538     31   2.2  
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    29   6.6  
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751...    29   6.6  
04_04_0261 + 24007790-24009098,24009191-24011118                       29   8.7  

>04_04_0827 - 28457858-28458028,28458513-28458669,28458984-28459083,
            28459204-28459231,28459321-28459396,28461276-28461355,
            28461642-28461805,28461897-28462056,28462154-28462277,
            28462901-28463941,28464141-28464259,28464512-28464823,
            28465222-28465425,28466068-28466751,28467301-28467474
          Length = 1197

 Score = 33.1 bits (72), Expect = 0.40
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +1

Query: 697  NIKFYYFNLSYNAVTNIILPLSKTENFNESFIERTFEIAKANKIGTHLKQIEELYYEMLE 876
            +IKF  F   YN+++  I  +     FN  F  R F  A+   I   +  I +   E+  
Sbjct: 1056 DIKFITFYQHYNSISIAICLIYHGAVFNIHFNIRCFLSAETKPIAAIINSILQQALELRS 1115

Query: 877  WIKRIN-LSEXTXKQNNXSFSKSDSQI 954
              K +N +SE T KQ N     + SQ+
Sbjct: 1116 CFKSLNYISESTVKQLNLDSLINFSQV 1142


>10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538
          Length = 327

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
 Frame = +1

Query: 577 RDMVDSVSSNLIKMIKKLNQWYQQKIYEDYPKNITNSQYTNIKFYYFNLSYNAVTNIILP 756
           RD++D+   ++ ++++KL+   + K YED  ++I +    ++K  Y  L      ++ + 
Sbjct: 114 RDIIDNRRHSISELMEKLDHESEIKYYEDKLRDIADEYNNSMKKNYPGLRKKKEKSLAIE 173

Query: 757 LSKTENFNESFI---ERTFEIAKANKIGTHLKQIE 852
             +T+      I   E   EI K +K+ +  +Q E
Sbjct: 174 TPRTQEIKIEQIKSEEPREEIQKLDKVLSEEEQWE 208


>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 802 FEIAKANKIGTHLKQIEELYYEMLEWIKRINLS 900
           +E      +  HL+  E+L+ E L W++R+N++
Sbjct: 645 YEYMDGGSLADHLRGQEDLHTEPLTWLQRLNIA 677


>04_03_0258 -
           13573730-13573816,13573881-13574666,13575043-13575126,
           13575254-13575322,13575324-13576228,13576517-13576784
          Length = 732

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 475 ECISFDRNKDIAWTNKSLSKYINQHCELTNNIQLRDMVDSVSSNLIKMIKKLNQ 636
           E IS  +N D +   +S+ + I   CE   N QL DMVD  S+++I   +++ Q
Sbjct: 628 EIISGRKNIDFSQPEESV-QLIKLLCEKAQNNQLIDMVDKHSNDMISRQEEVIQ 680


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 667 PKNITNSQYTNIKFYYFNLSYNAVTNIILPLS 762
           P  I  +Q  NI  + FNLS N  TN+ LPL+
Sbjct: 616 PDWIWANQNENIDVFKFNLSRNRFTNMELPLA 647


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,678,845
Number of Sequences: 37544
Number of extensions: 328056
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3328000860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)