Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_F23
(1141 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 197 4e-49
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 126 1e-27
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 95 3e-18
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 76 2e-12
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 5e-09
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 60 8e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 58 4e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 58 4e-07
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 51 6e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.003
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 44 0.006
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.068
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.12
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 37 1.1
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 34 5.9
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur... 34 7.8
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 7.8
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 7.8
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 197 bits (481), Expect = 4e-49
Identities = 92/103 (89%), Positives = 93/103 (90%)
Frame = +3
Query: 657 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 836
SK+ T R RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 837 CRLPDTCPPFSLREAWRXLIAHAVGISVRCRSSAPSWAVCTNP 965
CRLPDTCPPFSLREAWR LIAHAVGISVRCRS APSWAVCTNP
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNP 104
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 126 bits (303), Expect = 1e-27
Identities = 73/120 (60%), Positives = 78/120 (65%)
Frame = +3
Query: 489 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKASKRP 668
R +C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE 76
Query: 669 GTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 848
RPR RFSIGSAPLTSI K DAQ+ GGETRQDYKD RRFPL APSCALLF P LP
Sbjct: 77 ---IRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 95.1 bits (226), Expect = 3e-18
Identities = 45/54 (83%), Positives = 47/54 (87%)
Frame = +3
Query: 675 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 836
V+ PR RFSIGSAPLTSITK DAQ+ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 75.8 bits (178), Expect = 2e-12
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +2
Query: 815 VRSPVPTLPLTGYLSAFLPSGSVALXHSSRCRYLSSV 925
+RSPVPTLPLTGYLSAFLPSGSVAL HSSRCRYLSSV
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 37
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.5 bits (150), Expect = 5e-09
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = -3
Query: 665 PFAGLLLTCSFLRYPLILWITVLPPLSELIPLAAAERP 552
P LLTCSF YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p07168;
n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
protein CKO_pCKO2p07168 - Citrobacter koseri ATCC BAA-895
Length = 99
Score = 60.5 bits (140), Expect = 8e-08
Identities = 38/92 (41%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -1
Query: 1021 PGWXXXDSYRIRXXGRAERGXVHTAQLGADDLHRTEIPTA*AMXKR-HASRREKGGQVSG 845
PGW DSYR RAERG + ++ + ++ + K + +K QVSG
Sbjct: 8 PGWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQVSG 67
Query: 844 KRQGRNRRAHEGASRGKRLVSL*SCRVSPPLT 749
KRQGRNRRAHEGA+ K SL PPLT
Sbjct: 68 KRQGRNRRAHEGAAGEKSPASLSPVGFRPPLT 99
Score = 58.4 bits (135), Expect = 3e-07
Identities = 29/56 (51%), Positives = 37/56 (66%)
Frame = -3
Query: 965 GVXAHSPAWSGRPTPN*DTYSVSYEXAPRFPKGERRTGIR*AAGSEQESARGSFQG 798
GV A+SPAWS RP P+ DT SVSYE APRFPKG++ + +G Q R + +G
Sbjct: 27 GVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQV---SGKRQGRNRRAHEG 79
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 58.0 bits (134), Expect = 4e-07
Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +3
Query: 465 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 632
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 58.0 bits (134), Expect = 4e-07
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +3
Query: 564 CGERYQLTQRR*YG--YPQNQGITQERTCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 737
C R Q R G +P+N I +R + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 738 IDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 836
I Q + +T+ +YK T FPL++PS +LLF P
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 50.8 bits (116), Expect = 6e-05
Identities = 31/72 (43%), Positives = 33/72 (45%)
Frame = +3
Query: 750 VRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRXLIAHAVGISVRCR 929
VR GETRQD K P P PPFSL + + GIS RCR
Sbjct: 23 VRSGETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCR 82
Query: 930 SSAPSWAVCTNP 965
S APSWAV NP
Sbjct: 83 SFAPSWAVSKNP 94
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.003
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 268 DPDMIRYIDEFGQTTTRMQ 324
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 44.4 bits (100), Expect = 0.006
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 584 HSKAVIRLSTESGDNAGKNM 643
HSKAVIRLSTESGDNAGKNM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.068
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 463 SALMNRPTRGERRFAYW 513
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.12
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1
Query: 535 ERGSGRAPNTQTASPRALADSLMQ 464
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 36.7 bits (81), Expect = 1.1
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = -1
Query: 1021 PGWXXXDSYRIRXXGRAERG 962
PGW DSYRIR GRAERG
Sbjct: 8 PGWTQDDSYRIRRSGRAERG 27
Score = 35.9 bits (79), Expect = 1.9
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -3
Query: 965 GVXAHSPAWSGRPTPN 918
GV AHSPAWS RPTPN
Sbjct: 27 GVRAHSPAWSERPTPN 42
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 34.3 bits (75), Expect = 5.9
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3
Query: 965 GVXAHSPAWSGRPTPN*DT 909
GV A+SPAWS RPTP+ DT
Sbjct: 27 GVLAYSPAWSERPTPSRDT 45
>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
precursor; n=2; Polaromonas|Rep: Putative
uncharacterized protein precursor - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 268
Score = 33.9 bits (74), Expect = 7.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = -3
Query: 674 GSWPFAGLLLTCSFLRYP---LILWITVLPPLSELIPLAAAERP 552
G W +G L L++ LI+W+ LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 7.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 346 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 513
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 7.8
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 426 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 262
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 921,130,984
Number of Sequences: 1657284
Number of extensions: 17939036
Number of successful extensions: 47013
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 44589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46987
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 112626549911
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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