Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F23
         (1141 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0149 - 31987183-31987630,31987813-31987874                       28   1.8  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   2.2  
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310...    30   3.0  
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311...    29   6.8  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   9.0  

>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect(2) = 1.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 898 AMXKRHASRREKGGQVSGKRQGRNRRAHEGASRG 797
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109



 Score = 21.4 bits (43), Expect(2) = 1.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 988 RXXGRAERGXVHTAQLGADDLH 923
           R  GR ERG V  A   A D H
Sbjct: 21  RIHGREERGDVAAAGEDAADAH 42


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 690 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 848
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>06_03_0766 -
           24425486-24426245,24430766-24430855,24430951-24431070,
           24431568-24431746,24432046-24432231,24432454-24432547,
           24432679-24432743,24433652-24433987
          Length = 609

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 995 PDKAXRSG*TGVXAHSPAWSGRPTPN*DTYSVSYEXAP 882
           PD+  R     V ++ P W GR     DT+S ++E AP
Sbjct: 247 PDEIVRRIRVSVSSYDPNWQGRLLETYDTHSDAFEIAP 284


>05_03_0645 +
           16529635-16529794,16530188-16530312,16531100-16531173,
           16531961-16532006,16532638-16532730,16534429-16535886
          Length = 651

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
 Frame = +3

Query: 702 SIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREA 881
           SI    L  IT     V     R+ Y+  RR    + S      P  L  +  P ++ + 
Sbjct: 216 SIAIVVLVVITTAIVTVAIVVIRRSYRRGRRLSCSSFSPRRSLSPRALSSS--PSAMSQM 273

Query: 882 WRXLIAHAVGISVRC-RSSAPSWAVCTNPRSA 974
           WR  +A AVG S R   +SA SW     P SA
Sbjct: 274 WRAAVA-AVGSSPRASAASARSWPEMAAPSSA 304


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 522 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 677
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,723,577
Number of Sequences: 37544
Number of extensions: 536056
Number of successful extensions: 1532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3456450016
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)