Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F23
         (1141 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   5.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.8  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   8.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 783 DTRRFPLEAPSCALLFRPCR 842
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 57  RRGXTGGSXKEAPSRGA 7
           RRG   G  K  P RGA
Sbjct: 321 RRGYVAGDSKNQPPRGA 337


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
          1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 57 RRGXTGGSXKEAPSRGA 7
          RRG   G  K  P RGA
Sbjct: 32 RRGYVAGDSKNQPPRGA 48


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 8.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 889 KRHASRREKGGQVSGKRQGRNRRAH 815
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,346
Number of Sequences: 438
Number of extensions: 5341
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38560320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)