Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_F21
(1182 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0180 + 2034021-2034023,2034741-2035088 32 0.77
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747... 30 4.1
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 30 4.1
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264... 29 5.4
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878 29 5.4
01_01_0473 - 3478660-3480338,3480507-3480609 29 7.2
01_05_0249 - 19903154-19903454,19904114-19904168,19904707-199047... 29 9.5
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 32.3 bits (70), Expect = 0.77
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 301 DGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNAXAL 480
D + ++ LN L + + N EALE+ QN+ R EE +K H +++K L
Sbjct: 24 DAHKDQVKGLNGRISKLNDTIKELNDTI-EALERQVQNLTRYKEEKQKQHANLQKEFAEL 82
Query: 481 REK 489
K
Sbjct: 83 ERK 85
>02_03_0273 + 17173983-17174339,17174423-17174575,17174638-17174700,
17174943-17175026,17175120-17175242,17175466-17175519,
17175669-17175764,17176163-17176258,17177179-17177324,
17178503-17178632,17178697-17179272,17179364-17179462,
17179535-17179687,17179794-17180558,17181384-17181683
Length = 1064
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +1
Query: 220 EFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ--GALGDANGKAKEA 393
+F L +Q + L ++ + + W D ++ + QQL+ A+++Q G L A+EA
Sbjct: 903 KFINALARQVSILRAEREKE--RRFWMDENKGLQQQLSDTAEAVQAAGELLVRLNDAEEA 960
Query: 394 LEQSRQNIERTAEELRKAHPDVE 462
+++ E +E+ KA +++
Sbjct: 961 ASLAQKRAELAEQEMNKAFAEID 983
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 29.9 bits (64), Expect = 4.1
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = +1
Query: 358 ALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNAXALREKLXAXVXNTVQESQKLX 537
A+ DA G+ ++A+E ++ E+L A+PDVE L E L + ++ + L
Sbjct: 515 AIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSLE 574
Query: 538 XKVSSNVQETNE 573
+N Q +
Sbjct: 575 NLFVTNSQRVKK 586
>12_02_0910 +
24225180-24225415,24225523-24225678,24226387-24226450,
24226738-24226947,24227678-24227866,24228044-24228342,
24228575-24228851,24229045-24229317,24230316-24230549,
24230707-24230856
Length = 695
Score = 29.5 bits (63), Expect = 5.4
Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 7/150 (4%)
Frame = +1
Query: 103 QYIMAAK-----FVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKS 267
+Y M +K F VL I + G V FFK+ T H + Q
Sbjct: 163 EYFMTSKPLPQHFTVLVRAIPVTNGVSVSDAVDKFFKEYHSSTYLSHTVVHQTGKLRRLL 222
Query: 268 KDAQDFSKAWKDGSESVLQQLNAFAKSLQGALG--DANGKAKEALEQSRQNIERTAEELR 441
DA++ + +SV + G G D GK ++ LE +N+ +
Sbjct: 223 NDAENICTKLAN-LKSVRRTSGDPPGKFLGIFGRNDLVGKYQKRLEDLEENVRMEQSDTT 281
Query: 442 KAHPDVEKNAXALREKLXAXVXNTVQESQK 531
++ +V + R + A +++S K
Sbjct: 282 RSRQEVPAAFVSFRSRYGAANAIYIRQSDK 311
>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
Length = 947
Score = 29.5 bits (63), Expect = 5.4
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +3
Query: 75 ASPPSLSLSTVHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 227
+S PS S S+ SS R R G + + A RR Q PH GVP
Sbjct: 742 SSSPSSSASSEDSSIAPDSSRRRQREGEKIEEAERRLMYHQSAPPPHIGVP 792
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 29.1 bits (62), Expect = 7.2
Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 3/141 (2%)
Frame = +1
Query: 145 IALAQGAMVRRDAPDFFK-DIEHHT-KEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESV 318
+++++ + AP K D E T K+ K F+ S + D SK DGS S
Sbjct: 107 LSISESDSETQSAPPTPKPDSEETTPKQKRKPRAAGFDVFLGSGGSSDISKKGSDGSSSS 166
Query: 319 LQQLNAFAKSLQGALGDANGKA-KEALEQSRQNIERTAEELRKAHPDVEKNAXALREKLX 495
+ ++ L+ GD + A E + + ++ E+L EKN EKL
Sbjct: 167 SSESDSEVDELREDNGDGSPFALNERIAELEDELQEAREKLEALE---EKNTRCQCEKLE 223
Query: 496 AXVXNTVQESQKLXXKVSSNV 558
+ ++ E L ++ +
Sbjct: 224 EKLKDSHSEISSLQKELEGQL 244
>01_05_0249 -
19903154-19903454,19904114-19904168,19904707-19904791,
19905140-19905511
Length = 270
Score = 28.7 bits (61), Expect = 9.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 337 FAKSLQGALG--DANGKAKEALEQSRQNIERTAEELRKAHPDV 459
F KSL G + D +GKAK+ + + + + +EE++ + DV
Sbjct: 184 FEKSLVGQINIEDMSGKAKDVINEEGSSEDGNSEEMKDSDDDV 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.129 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,948,198
Number of Sequences: 37544
Number of extensions: 207756
Number of successful extensions: 1017
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3619930760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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