Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F19
         (1160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...   125   1e-29
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    30   0.70 
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    28   2.2  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    26   8.7  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    26   8.7  

>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score =  125 bits (301), Expect = 1e-29
 Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 4/204 (1%)
 Frame = +3

Query: 306 MFVXVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQ-FXXXXXXXXXX 482
           +FV V L   L G  +V+ + +   A G L F+ +LQ FAY ++   + F          
Sbjct: 99  LFVCVVLM--LVGSTLVVFKKRQAYAIGSLLFVTLLQAFAYGLITSGEMFFRNMSVIGGL 156

Query: 483 XXXXXXXXXXXXXSLFAGVPSLGENKPKTYLQLAGRILLAFMFITLLRFE---ISFLQII 653
                        + FAG+P++ E+  +TY QLAGR+LL FMF+ LL  E   IS+ +I+
Sbjct: 157 CLVASDTFIHRRINRFAGLPAVSEHNKRTYFQLAGRVLLIFMFLGLLAKEGSGISWTRIL 216

Query: 654 QDLLGSILMILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAVPSYKPLRDFLKYDFFQTL 833
             +L      +V +G++ K                 N++W+VP   P RDF +YDFFQTL
Sbjct: 217 VHILSVTACAMVVIGFKAKFFAAVLVLILSVANFIINSFWSVPRESPYRDFYRYDFFQTL 276

Query: 834 SVIGGLLMIVYLGPGGVSMDEHKK 905
           S++GGLL +V  GPG  S+DE KK
Sbjct: 277 SIVGGLLYLVNTGPGKFSVDEKKK 300


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 196 CAFSPHXWXPVSACGSSGQRSAPXWTCPGAAANSSP 303
           C+++PH + PV++ GSS   ++   + PG A+ S P
Sbjct: 110 CSYNPH-YLPVNSNGSSPSHTSSLDSIPGYASGSGP 144


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = -1

Query: 746 NCQYEDK---HQSRQLRPVAHRHQYHQDAPEKI--LYDLQE*DFKS*ERDEHEGQQDATG 582
           N   +DK   H+S   R ++   +YHQD P+K    Y L+E D    +R E E +Q    
Sbjct: 256 NSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDK---QRKEFENRQRLQK 312

Query: 581 ELQVRLRFVLSERRHAREQT 522
           E + +     + + HA   T
Sbjct: 313 EKEFQKSREAALKIHASRNT 332


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +3

Query: 828 TLSVIGGLLMIVYLGPGGVSMDEHKKKWXN*VNADGLHKKWCN----INPFIHFSXRV 989
           T S  GG+  I  +G GG++    +  W N    + +  K       INP I+ S RV
Sbjct: 6   TNSSSGGIFKIAIVGAGGINFGTPEGPWNNAQRVEKVLGKSLRVTALINPLINESERV 63


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 771 WAVPSYKPLRDFLKYDFFQTLSVIGGLLMIVYLGPGGVSMDE 896
           W    Y  +  FL     + +SVIG +++ + +  GGV  D+
Sbjct: 192 WGTEGYGEVEFFLS--IMKVISVIGFVILSIIIAAGGVPTDD 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,879,081
Number of Sequences: 5004
Number of extensions: 74155
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)