Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F19
         (1160 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58728-5|AAB00591.1|  277|Caenorhabditis elegans Surfeit homolog...   245   4e-65
Y14949-1|CAA75173.1|  277|Caenorhabditis elegans SURF-4 protein ...   245   5e-65
Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical pr...    94   2e-19
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    30   3.6  
U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical pr...    29   8.3  

>U58728-5|AAB00591.1|  277|Caenorhabditis elegans Surfeit homolog
           protein 4 protein.
          Length = 277

 Score =  245 bits (600), Expect = 4e-65
 Identities = 116/265 (43%), Positives = 164/265 (61%), Gaps = 1/265 (0%)
 Frame = +3

Query: 120 VLNRCXPFAAQVIRKGKNVFPTVARXXXXXXXXXXXXRMWFQWSAQRAXMDMSWGCGKFL 299
           +L +    A    RK +   P +AR            RM+FQW  Q+  M  SW CG F+
Sbjct: 13  MLAKAEDAAEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFMQESWSCGWFI 72

Query: 300 ATMFVXVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQFXXXXXXXXX 479
           AT+FV  N FGQ    +M++ R KV +ACG+L  IV+LQT AY ILWD++F         
Sbjct: 73  ATLFVIYNFFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFLARNIAVGG 132

Query: 480 XXXXXXXXXXXXXXSLFAGVPSLGE-NKPKTYLQLAGRILLAFMFITLLRFEISFLQIIQ 656
                         SLFAGVP++G+ NKPK+Y+ LAGR+LL FMF++L+ FE+SF+Q+++
Sbjct: 133 GLLLLLAETQEEKASLFAGVPTMGDSNKPKSYMLLAGRVLLIFMFMSLMHFEMSFMQVLE 192

Query: 657 DLLGSILMILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAVPSYKPLRDFLKYDFFQTLS 836
            ++G  L+ LV++GY+TK               + NAWW +PS +  RDF+KYDFFQT+S
Sbjct: 193 IVVGFALITLVSIGYKTKLSAIVLVIWLFGLNLWLNAWWTIPSDRFYRDFMKYDFFQTMS 252

Query: 837 VIGGLLMIVYLGPGGVSMDEHKKKW 911
           VIGGLL+++  GPGGVS+D++KK+W
Sbjct: 253 VIGGLLLVIAYGPGGVSVDDYKKRW 277


>Y14949-1|CAA75173.1|  277|Caenorhabditis elegans SURF-4 protein
           protein.
          Length = 277

 Score =  245 bits (599), Expect = 5e-65
 Identities = 115/257 (44%), Positives = 161/257 (62%), Gaps = 1/257 (0%)
 Frame = +3

Query: 144 AAQVIRKGKNVFPTVARXXXXXXXXXXXXRMWFQWSAQRAXMDMSWGCGKFLATMFVXVN 323
           A    RK +   P +AR            RM+FQW  Q+  M  SW CG F+AT+FV  N
Sbjct: 21  AEDFFRKTRTYLPHIARLCLVSTFLEDGIRMYFQWDDQKQFMQESWSCGWFIATLFVIYN 80

Query: 324 LFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQFXXXXXXXXXXXXXXXXX 503
            FGQ    +M++ R KV +ACG+L  IV+LQT AY ILWD++F                 
Sbjct: 81  FFGQFIPVLMIMLRKKVLVACGILASIVILQTIAYHILWDLKFLARNIAVGGGLLLLLAE 140

Query: 504 XXXXXXSLFAGVPSLGE-NKPKTYLQLAGRILLAFMFITLLRFEISFLQIIQDLLGSILM 680
                 SLFAGVP++G+ NKPK+Y+ LAGR+LL FMF++L+ FE+SF+Q+++ ++G  L+
Sbjct: 141 TQEEKASLFAGVPTMGDSNKPKSYMLLAGRVLLIFMFMSLMHFEMSFMQVLEIVVGFALI 200

Query: 681 ILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAVPSYKPLRDFLKYDFFQTLSVIGGLLMI 860
            LV++GY+TK               + NAWW +PS +  RDF+KYDFFQT+SVIGGLL++
Sbjct: 201 TLVSIGYKTKLSAIVLVIWLFGLNLWLNAWWTIPSDRFYRDFMKYDFFQTMSVIGGLLLV 260

Query: 861 VYLGPGGVSMDEHKKKW 911
           +  GPGGVS+D++KK+W
Sbjct: 261 IAYGPGGVSVDDYKKRW 277


>Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical
           protein T02E1.7 protein.
          Length = 269

 Score = 93.9 bits (223), Expect = 2e-19
 Identities = 65/267 (24%), Positives = 110/267 (41%), Gaps = 3/267 (1%)
 Frame = +3

Query: 120 VLNRCXPFAAQVIRKGKNVFPTVARXXXXXXXXXXXXRMWFQWSAQRAXMDMSWGCGKFL 299
           V+ RC  +   + R  + V PT+ R            R+ F           +WG     
Sbjct: 6   VITRCEDYTETLARNTRKVLPTIGRLLLISTFVEDGLRLLFNTHDHVNHFSYNWGLNYHF 65

Query: 300 ATMFVXVNLFGQLGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSIL--WDVQFXXXXXXX 473
           +     V +   L G + V+ R KV  +  VL F +  Q   Y +   + +         
Sbjct: 66  SLFLTIVMIINLLFGSLFVMMRYKVTESSAVLGFTIFAQVILYQLYTTYHLLTRNISIVA 125

Query: 474 XXXXXXXXXXXXXXXXSLFAGVPSLGENKPKTYLQLAG-RILLAFMFITLLRFEISFLQI 650
                           + +  +P        T + LA  R+ L  M I+++ F++S+ +I
Sbjct: 126 AIMLLVAENMLRKPKPANYTQLPRDEHEIEVTSVLLAACRVCLNLMLISMVHFDMSYTRI 185

Query: 651 IQDLLGSILMILVTVGYRTKXXXXXXXXXXXXXXXYHNAWWAVPSYKPLRDFLKYDFFQT 830
           +  ++   +MI V +G++T+                 N +W   +   +   ++YDFFQT
Sbjct: 186 LLCIISYGMMIFVWLGFKTRMMSFMLATWLFAYNIVLNDFWNKDAELHI---IRYDFFQT 242

Query: 831 LSVIGGLLMIVYLGPGGVSMDEHKKKW 911
           LS IGGLL++++ GPG  S DE KKKW
Sbjct: 243 LSAIGGLLLLIHTGPGEFSFDELKKKW 269


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 191  APVPSLHXPGGRSPHVVPVVSAA 259
            AP P+ H  G + P++VPVV+AA
Sbjct: 1788 APQPTEHTYGAQGPNIVPVVTAA 1810


>U55364-3|AAN84821.1|  349|Caenorhabditis elegans Hypothetical
           protein F21C10.12 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 977 EMYEWIYVAPFFM*SVCVDLIXPFLLVFV 891
           E + W Y++ F + SV  D + PF+++F+
Sbjct: 176 EEHWWYYISYFIIISVIFDYLLPFVIMFI 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,408,889
Number of Sequences: 27780
Number of extensions: 464736
Number of successful extensions: 1351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3161640774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)