Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F17
         (1173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.13 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.94 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    27   3.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    22   10.0 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 523 PPXPXXGGFFXXXKXPPPPPPRXXKK 446
           PP P   GF    + PPPPPP   KK
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 30.3 bits (65), Expect = 0.54
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -2

Query: 527 NPPXXPGXGXFFXXXXXPPPPPPXXKKK 444
           NPP  P    F      PPPPPP   KK
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 1003 SPXXPPXXXGFXPPPPXGGPXPP 935
            +P  PP   GF PP     P PP
Sbjct: 8    NPPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -3

Query: 1000 PXXPPXXXGFXPPPPXGGPXPPXXXXPXXXFXAPPP 893
            P  PP   G  PPPP   P PP        + AP P
Sbjct: 764  PPPPPGVAGAGPPPPP--PPPPAVSAGGSRYYAPAP 797



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = -3

Query: 619 PPXGGGXXXPPPNPLAXXXXXXGXGGXVXXXTPPXPXXGGFFXXXKXPPPPPP 461
           PP       P P P+         GG      PP P   G       PPPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGP-----PPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -3

Query: 1000 PXXPPXXXGFXPPPPXGGPXPPXXXXPXXXFXAPPPXXP 884
            P   P      PP P  G  PP    P      PPP  P
Sbjct: 742  PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = -3

Query: 1003 SPXXPPXXXGFXPPPPXGGPXPPXXXXPXXXFXAPPPXXPG 881
            SP  PP       P P   P PP    P      PPP  PG
Sbjct: 731  SPPPPPPAVIVPTPAPAPIPVPP--PAPIMGGPPPPPPPPG 769


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 FFXXFFFXFXFXXFXXXLFFLFFFYV 190
           FF  F   F    F   LFFLF+FY+
Sbjct: 279 FFQHFLARFFCLIFFPFLFFLFWFYM 304


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 22.2 bits (45), Expect(2) = 10.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 478  PPPPPPRXXKK 446
            PPPPPP   +K
Sbjct: 1097 PPPPPPAEVEK 1107



 Score = 21.8 bits (44), Expect(2) = 10.0
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = -3

Query: 523  PPXPXXGGFFXXXKXPPPPPP 461
            P  P           PPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPP 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.149    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,992
Number of Sequences: 5004
Number of extensions: 38584
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 629529512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)