Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F13
         (1225 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       69   6e-12
07_03_1662 + 28447419-28447666,28448429-28448573                       65   9e-11

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 69.3 bits (162), Expect = 6e-12
 Identities = 38/97 (39%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
 Frame = +2

Query: 212 FTIXCTHPAXARXLAVGNFEQSLKXHVKVEG-KTNNLSNHVVVARDKPKVAITAXIPFSX 388
           F I C  P   + + + + E+ L+  +KV G K  NL   V V+RDK KV +T+  PFS 
Sbjct: 24  FVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGPFSK 83

Query: 389 XXXXXXXXXXXXXXXXRDWLRVVASAHD--AYELRYF 493
                           RDWLRV+AS  D   YELRYF
Sbjct: 84  RYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYF 120


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 65.3 bits (152), Expect = 9e-11
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
 Frame = +2

Query: 212 FTIXCTHPAXARXLAVGNFEQSLKXHVKVE-GKTNNLSNHVVVARDKPKVAITAXIPFSX 388
           F I C+ P   + + + + E+ L+  +KV  GK  NL + V V RDK KV +T+   FS 
Sbjct: 23  FVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAFSK 82

Query: 389 XXXXXXXXXXXXXXXXRDWLRVVASAHD--AYELRYF 493
                           RDWLRV+A+  D   YELRYF
Sbjct: 83  RYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYF 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,839,911
Number of Sequences: 37544
Number of extensions: 278343
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3759607596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)