Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F12
         (1191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...   261   1e-70
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    29   1.7  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    27   3.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   9.0  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score =  261 bits (640), Expect = 1e-70
 Identities = 138/307 (44%), Positives = 186/307 (60%), Gaps = 3/307 (0%)
 Frame = +3

Query: 87   SFVXATLVLSXGAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKRVNAW 266
            SF   TLVLS G  V  ++ SGFL +   L    MG  +LVQ+ P G+  +RA+K+ + W
Sbjct: 502  SFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMGRDSLVQIHPKGIRYIRANKQTSEW 561

Query: 267  KAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPT---GQLNEYTEXKXLSSAVCCMALG 437
            K P    +V  A+N  Q+V+AL+ G LVYFEM      GQLNEY E K L++ V  +ALG
Sbjct: 562  KLPQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVEGGQLNEYQERKTLTANVTSLALG 621

Query: 438  SVAAGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIEQPFESGAKS 617
             V  G +R+ F+ +  +D TVR++SLD    L   S+QAL + A SLCII  P      S
Sbjct: 622  PVQEGSRRSNFMCLACDDATVRVLSLDLYTTLENLSVQALSSPANSLCII--PMNVNGVS 679

Query: 618  ALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWL 797
             L+L+IGL NGV LRT +D  SG L DTRTR+LG R VK++ + ++    VLAVSSRT+L
Sbjct: 680  TLYLHIGLMNGVYLRTVIDVTSGQLLDTRTRFLGPRAVKIYPITMKNQNTVLAVSSRTFL 739

Query: 798  GYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTFVPX 977
             Y YQ    L+P++Y  +++A+ F+S QC EGIV I  NTL+I+    L         P 
Sbjct: 740  AYSYQQNLQLSPIAYSAIDHASSFASEQCPEGIVAIQKNTLKIFTVDSLQDDLKSDIYPL 799

Query: 978  KYTPRKL 998
              TPRK+
Sbjct: 800  ICTPRKI 806


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 870

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 354  FEMDPTGQLNEYTEXKXLSSAVCCMALGSVAAGEQRAWFLAVGLNDNTV-RIISLDPADC 530
            F  DP   L E  E   L  AV C+ALG+     QRA   A+  N+  +  +++L+ A  
Sbjct: 788  FSHDPNTGLLESIEHSNLKEAVLCLALGA-DVNYQRAVVKALLKNNYLIAELLTLNGASL 846

Query: 531  -LSPRSMQALPAGAES 575
             +   +M+ L A A++
Sbjct: 847  NVDEVTMETLSARAQA 862


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 825 LTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGA 950
           L  L  +CLE  AG    +CT   V I+S+ L I A  K G+
Sbjct: 244 LEQLQPDCLEVPAGQRQLRCTGAAVKIASDLLGI-AFPKCGS 284


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +3

Query: 507 ISLDPADCLSPRSMQALPAGAESLCIIEQPFESGAKSALH 626
           ++L+P+  L+   +  +P  + ++C++  P E      LH
Sbjct: 512 VTLNPSKALTTVYLVGVPLQSATICVVSLPTEDSQPHVLH 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,970,312
Number of Sequences: 5004
Number of extensions: 74259
Number of successful extensions: 321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 641482604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)