Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F12
         (1191 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...   296   2e-80
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    62   1e-09
03_06_0106 - 31682200-31682775                                         30   4.1  
12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673...    29   7.2  

>02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,
            1982950-1983087
          Length = 1228

 Score =  296 bits (727), Expect = 2e-80
 Identities = 152/309 (49%), Positives = 199/309 (64%), Gaps = 6/309 (1%)
 Frame = +3

Query: 87   SFVXATLVLSXGAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKRVNAW 266
            SF   TLVLS G  +  V+ S FL T   L    +G  +L+QV P G+  +R D RVN W
Sbjct: 491  SFANVTLVLSIGETIEEVSDSQFLDTTHSLAVSLLGEDSLMQVHPNGIRHIREDGRVNEW 550

Query: 267  KAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALGSVA 446
            + PGKK++     N+ QVVIAL+GG L+YFEMD TGQL E  E + +S  V C+A+  V 
Sbjct: 551  RTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLME-VEKQDMSGDVACLAIAPVP 609

Query: 447  AGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIEQPFESGAKSA-- 620
             G QR+ FLAVG  DNT+RI+S+DP DCL P S+Q++ +  ESL  +E     G +    
Sbjct: 610  EGRQRSRFLAVGSFDNTIRILSVDPDDCLQPLSVQSVSSAPESLMFLEVQASVGGEDGAD 669

Query: 621  ----LHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSR 788
                L LN GL NGVL RT +D V+G L+DTR+R+LG RP KLF   V   +A+L +SSR
Sbjct: 670  HPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAMLCLSSR 729

Query: 789  TWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTF 968
             WLGY +Q  F LTPLS + LE AA FSS QC+EG+V ++ + LRI+  + LG  FN+T 
Sbjct: 730  PWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIEHLGETFNETA 789

Query: 969  VPXKYTPRK 995
            +P +YTPRK
Sbjct: 790  IPLRYTPRK 798


>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 3/227 (1%)
 Frame = +3

Query: 255  VNAWKAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMAL 434
            V+ W AP   S+   + N SQV++A  GG LVY E+  + +L E    + L   + C+ L
Sbjct: 700  VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDS-KLVEVKHIQ-LEHEISCVDL 757

Query: 435  GSVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSM--QALPAGAESLCIIEQPFES 605
              +    Q +   AVG+  D +VRI+SL   + +   ++  + +P     LC +E     
Sbjct: 758  NPIGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSV-LLCTLE----- 811

Query: 606  GAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSS 785
                  +L   L +G L    L++ +G+L D +   LG++P+ L     +    V A S 
Sbjct: 812  ---GVSYLLCALGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSD 868

Query: 786  RTWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRI 926
            R  + Y    +   + ++ + + +   F++    + +       L I
Sbjct: 869  RPTVIYSSNKKLLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSI 915


>03_06_0106 - 31682200-31682775
          Length = 191

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 64  SXSSIXXVHSFXPHLXFPSVLLLHPSLP 147
           S  +I   H+F P+L FP   L+H +LP
Sbjct: 5   SRLTISGAHAFFPYLSFPEYSLIHRNLP 32


>12_02_0360 -
           17966857-17966865,17966866-17966954,17967276-17967399,
           17967639-17967717,17968267-17968352,17968471-17968661,
           17970496-17970560,17971192-17971282,17971705-17971801,
           17971883-17972128,17972248-17972505
          Length = 444

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 603 SGAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLG 719
           SG  + L L  GL   V L TT+D   G+  D   R+LG
Sbjct: 252 SGGHNLLVLAHGLGQYVQLGTTIDDAIGEAYDKSARWLG 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,115,140
Number of Sequences: 37544
Number of extensions: 501847
Number of successful extensions: 1122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3631571424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)