Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_F12
(1191 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein. 433 e-121
BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, sub... 433 e-121
AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SA... 433 e-121
U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding fa... 74 1e-12
U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein. 74 1e-12
L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1 pr... 74 1e-12
BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA bin... 74 1e-12
BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA bin... 74 1e-12
BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA bin... 74 1e-12
AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA bin... 74 1e-12
AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum G... 73 2e-12
U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylat... 37 0.17
BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenyl... 37 0.17
>D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein.
Length = 1253
Score = 433 bits (1067), Expect = e-121
Identities = 224/337 (66%), Positives = 256/337 (75%), Gaps = 10/337 (2%)
Frame = +3
Query: 87 SFVXATLVLSXGAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKRVNAW 266
SFV ATLVLS G V VT SGFLGT P L C +G ALVQV P G+ +RADKRVN W
Sbjct: 513 SFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEW 572
Query: 267 KAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALGSVA 446
K PGKK++V CAVNQ QVVIALTGG LVYFEMDP+GQLNEYTE K +S+ V CM+L +V
Sbjct: 573 KTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVP 632
Query: 447 AGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIE--------QPFE 602
GEQR+ FLAVGL DNTVRIISLDP+DCL P SMQALPA ESLCI+E + E
Sbjct: 633 PGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGE 692
Query: 603 SGAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVS 782
G+ L+LNIGL NGVLLRT LD V+GDL+DTRTRYLGSRPVKLF+VR+Q EAVLA+S
Sbjct: 693 RGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMS 752
Query: 783 SRTWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQ 962
SR+WL Y YQ+RFHLTPLSYE LE+A+GF+S QC EGIV IS+NTLRI A +KLGAVFNQ
Sbjct: 753 SRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQ 812
Query: 963 TFVPXKYTPRKL**ILXQSH--YSLXTDHXAYPEEMK 1067
P +YTPRK I +S+ + TDH AY E K
Sbjct: 813 VAFPLQYTPRKF-VIHPESNNLIIIETDHNAYTEATK 848
>BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, subunit
3, 130kDa protein.
Length = 1217
Score = 433 bits (1067), Expect = e-121
Identities = 224/337 (66%), Positives = 256/337 (75%), Gaps = 10/337 (2%)
Frame = +3
Query: 87 SFVXATLVLSXGAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKRVNAW 266
SFV ATLVLS G V VT SGFLGT P L C +G ALVQV P G+ +RADKRVN W
Sbjct: 477 SFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEW 536
Query: 267 KAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALGSVA 446
K PGKK++V CAVNQ QVVIALTGG LVYFEMDP+GQLNEYTE K +S+ V CM+L +V
Sbjct: 537 KTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVP 596
Query: 447 AGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIE--------QPFE 602
GEQR+ FLAVGL DNTVRIISLDP+DCL P SMQALPA ESLCI+E + E
Sbjct: 597 PGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGE 656
Query: 603 SGAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVS 782
G+ L+LNIGL NGVLLRT LD V+GDL+DTRTRYLGSRPVKLF+VR+Q EAVLA+S
Sbjct: 657 RGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMS 716
Query: 783 SRTWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQ 962
SR+WL Y YQ+RFHLTPLSYE LE+A+GF+S QC EGIV IS+NTLRI A +KLGAVFNQ
Sbjct: 717 SRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQ 776
Query: 963 TFVPXKYTPRKL**ILXQSH--YSLXTDHXAYPEEMK 1067
P +YTPRK I +S+ + TDH AY E K
Sbjct: 777 VAFPLQYTPRKF-VIHPESNNLIIIETDHNAYTEATK 812
>AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SAP 130
protein.
Length = 1217
Score = 433 bits (1067), Expect = e-121
Identities = 224/337 (66%), Positives = 256/337 (75%), Gaps = 10/337 (2%)
Frame = +3
Query: 87 SFVXATLVLSXGAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKRVNAW 266
SFV ATLVLS G V VT SGFLGT P L C +G ALVQV P G+ +RADKRVN W
Sbjct: 477 SFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEW 536
Query: 267 KAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALGSVA 446
K PGKK++V CAVNQ QVVIALTGG LVYFEMDP+GQLNEYTE K +S+ V CM+L +V
Sbjct: 537 KTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVP 596
Query: 447 AGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIE--------QPFE 602
GEQR+ FLAVGL DNTVRIISLDP+DCL P SMQALPA ESLCI+E + E
Sbjct: 597 PGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGE 656
Query: 603 SGAKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVS 782
G+ L+LNIGL NGVLLRT LD V+GDL+DTRTRYLGSRPVKLF+VR+Q EAVLA+S
Sbjct: 657 RGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMS 716
Query: 783 SRTWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQ 962
SR+WL Y YQ+RFHLTPLSYE LE+A+GF+S QC EGIV IS+NTLRI A +KLGAVFNQ
Sbjct: 717 SRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQ 776
Query: 963 TFVPXKYTPRKL**ILXQSH--YSLXTDHXAYPEEMK 1067
P +YTPRK I +S+ + TDH AY E K
Sbjct: 777 VAFPLQYTPRKF-VIHPESNNLIIIETDHNAYTEATK 812
>U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding factor
protein.
Length = 1140
Score = 73.7 bits (173), Expect = 1e-12
Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 6/310 (1%)
Frame = +3
Query: 87 SFVXATLVLSX-GAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKR--V 257
SFV T VL G V GF+ C + H L+Q++ + + + + V
Sbjct: 428 SFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV 487
Query: 258 NAWKAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALG 437
+ WK P K++ + N SQVV+A+ G L Y ++ P +L + + + + V C+ +
Sbjct: 488 SEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHTE-MEHEVACLDIT 544
Query: 438 SVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSMQALPAGAESL--CIIEQPFESG 608
+ + A+GL D + RI+ L + L + G E + I+ FE
Sbjct: 545 PLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-----GGEIIPRSILMTTFE-- 597
Query: 609 AKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSR 788
S+ +L L +G L L+ +G L+D + LG++P L R + V A S R
Sbjct: 598 --SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDR 655
Query: 789 TWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTF 968
+ Y ++ + ++ + + Y +S + + +++TL I ++ + +T
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRT- 714
Query: 969 VPXKYTPRKL 998
VP +PRK+
Sbjct: 715 VPLYESPRKI 724
>U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein.
Length = 1140
Score = 73.7 bits (173), Expect = 1e-12
Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 6/310 (1%)
Frame = +3
Query: 87 SFVXATLVLSX-GAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKR--V 257
SFV T VL G V GF+ C + H L+Q++ + + + + V
Sbjct: 428 SFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV 487
Query: 258 NAWKAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALG 437
+ WK P K++ + N SQVV+A+ G L Y ++ P +L + + + + V C+ +
Sbjct: 488 SEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHTE-MEHEVACLDIT 544
Query: 438 SVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSMQALPAGAESL--CIIEQPFESG 608
+ + A+GL D + RI+ L + L + G E + I+ FE
Sbjct: 545 PLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-----GGEIIPRSILMTTFE-- 597
Query: 609 AKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSR 788
S+ +L L +G L L+ +G L+D + LG++P L R + V A S R
Sbjct: 598 --SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDR 655
Query: 789 TWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTF 968
+ Y ++ + ++ + + Y +S + + +++TL I ++ + +T
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRT- 714
Query: 969 VPXKYTPRKL 998
VP +PRK+
Sbjct: 715 VPLYESPRKI 724
>L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1
protein.
Length = 1140
Score = 73.7 bits (173), Expect = 1e-12
Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 6/310 (1%)
Frame = +3
Query: 87 SFVXATLVLSX-GAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKR--V 257
SFV T VL G V GF+ C + H L+Q++ + + + + V
Sbjct: 428 SFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV 487
Query: 258 NAWKAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALG 437
+ WK P K++ + N SQVV+A+ G L Y ++ P +L + + + + V C+ +
Sbjct: 488 SEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHTE-MEHEVACLDIT 544
Query: 438 SVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSMQALPAGAESL--CIIEQPFESG 608
+ + A+GL D + RI+ L + L + G E + I+ FE
Sbjct: 545 PLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-----GGEIIPRSILMTTFE-- 597
Query: 609 AKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSR 788
S+ +L L +G L L+ +G L+D + LG++P L R + V A S R
Sbjct: 598 --SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDR 655
Query: 789 TWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTF 968
+ Y ++ + ++ + + Y +S + + +++TL I ++ + +T
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRT- 714
Query: 969 VPXKYTPRKL 998
VP +PRK+
Sbjct: 715 VPLYESPRKI 724
>BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA binding
protein 1, 127kDa protein.
Length = 1140
Score = 73.7 bits (173), Expect = 1e-12
Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 6/310 (1%)
Frame = +3
Query: 87 SFVXATLVLSX-GAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKR--V 257
SFV T VL G V GF+ C + H L+Q++ + + + + V
Sbjct: 428 SFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV 487
Query: 258 NAWKAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALG 437
+ WK P K++ + N SQVV+A+ G L Y ++ P +L + + + + V C+ +
Sbjct: 488 SEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHTE-MEHEVACLDIT 544
Query: 438 SVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSMQALPAGAESL--CIIEQPFESG 608
+ + A+GL D + RI+ L + L + G E + I+ FE
Sbjct: 545 PLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-----GGEIIPRSILMTTFE-- 597
Query: 609 AKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSR 788
S+ +L L +G L L+ +G L+D + LG++P L R + V A S R
Sbjct: 598 --SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDR 655
Query: 789 TWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTF 968
+ Y ++ + ++ + + Y +S + + +++TL I ++ + +T
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRT- 714
Query: 969 VPXKYTPRKL 998
VP +PRK+
Sbjct: 715 VPLYESPRKI 724
>BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA binding
protein 1, 127kDa protein.
Length = 1140
Score = 73.7 bits (173), Expect = 1e-12
Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 6/310 (1%)
Frame = +3
Query: 87 SFVXATLVLSX-GAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKR--V 257
SFV T VL G V GF+ C + H L+Q++ + + + + V
Sbjct: 428 SFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV 487
Query: 258 NAWKAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALG 437
+ WK P K++ + N SQVV+A+ G L Y ++ P +L + + + + V C+ +
Sbjct: 488 SEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHTE-MEHEVACLDIT 544
Query: 438 SVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSMQALPAGAESL--CIIEQPFESG 608
+ + A+GL D + RI+ L + L + G E + I+ FE
Sbjct: 545 PLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-----GGEIIPRSILMTTFE-- 597
Query: 609 AKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSR 788
S+ +L L +G L L+ +G L+D + LG++P L R + V A S R
Sbjct: 598 --SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDR 655
Query: 789 TWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTF 968
+ Y ++ + ++ + + Y +S + + +++TL I ++ + +T
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRT- 714
Query: 969 VPXKYTPRKL 998
VP +PRK+
Sbjct: 715 VPLYESPRKI 724
>BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA binding
protein 1, 127kDa protein.
Length = 1140
Score = 73.7 bits (173), Expect = 1e-12
Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 6/310 (1%)
Frame = +3
Query: 87 SFVXATLVLSX-GAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKR--V 257
SFV T VL G V GF+ C + H L+Q++ + + + + V
Sbjct: 428 SFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV 487
Query: 258 NAWKAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALG 437
+ WK P K++ + N SQVV+A+ G L Y ++ P +L + + + + V C+ +
Sbjct: 488 SEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHTE-MEHEVACLDIT 544
Query: 438 SVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSMQALPAGAESL--CIIEQPFESG 608
+ + A+GL D + RI+ L + L + G E + I+ FE
Sbjct: 545 PLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-----GGEIIPRSILMTTFE-- 597
Query: 609 AKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSR 788
S+ +L L +G L L+ +G L+D + LG++P L R + V A S R
Sbjct: 598 --SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDR 655
Query: 789 TWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTF 968
+ Y ++ + ++ + + Y +S + + +++TL I ++ + +T
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRT- 714
Query: 969 VPXKYTPRKL 998
VP +PRK+
Sbjct: 715 VPLYESPRKI 724
>AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA binding
protein 1, 127kDa protein.
Length = 1140
Score = 73.7 bits (173), Expect = 1e-12
Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 6/310 (1%)
Frame = +3
Query: 87 SFVXATLVLSX-GAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKR--V 257
SFV T VL G V GF+ C + H L+Q++ + + + + V
Sbjct: 428 SFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV 487
Query: 258 NAWKAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALG 437
+ WK P K++ + N SQVV+A+ G L Y ++ P +L + + + + V C+ +
Sbjct: 488 SEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISHTE-MEHEVACLDIT 544
Query: 438 SVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSMQALPAGAESL--CIIEQPFESG 608
+ + A+GL D + RI+ L + L + G E + I+ FE
Sbjct: 545 PLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-----GGEIIPRSILMTTFE-- 597
Query: 609 AKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSR 788
S+ +L L +G L L+ +G L+D + LG++P L R + V A S R
Sbjct: 598 --SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDR 655
Query: 789 TWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTF 968
+ Y ++ + ++ + + Y +S + + +++TL I ++ + +T
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRT- 714
Query: 969 VPXKYTPRKL 998
VP +PRK+
Sbjct: 715 VPLYESPRKI 724
>AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum Group
E Complementing protein protein.
Length = 1140
Score = 72.9 bits (171), Expect = 2e-12
Identities = 75/310 (24%), Positives = 137/310 (44%), Gaps = 6/310 (1%)
Frame = +3
Query: 87 SFVXATLVLSX-GAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKR--V 257
SFV T VL G V GF+ C + H L+Q++ + + + + V
Sbjct: 428 SFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALV 487
Query: 258 NAWKAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALG 437
+ WK P K++ + N SQVV+A+ G L Y ++ P +L + + + V C+ +
Sbjct: 488 SEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQ-ELRQISH-TGMEHEVACLDIT 544
Query: 438 SVAAGEQRAWFLAVGL-NDNTVRIISLDPADCLSPRSMQALPAGAESL--CIIEQPFESG 608
+ + A+GL D + RI+ L + L + G E + I+ FE
Sbjct: 545 PLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML-----GGEIIPRSILMTTFE-- 597
Query: 609 AKSALHLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSR 788
S+ +L L +G L L+ +G L+D + LG++P L R + V A S R
Sbjct: 598 --SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDR 655
Query: 789 TWLGYHYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTF 968
+ Y ++ + ++ + + Y +S + + +++TL I ++ + +T
Sbjct: 656 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRT- 714
Query: 969 VPXKYTPRKL 998
VP +PRK+
Sbjct: 715 VPLYESPRKI 724
>U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylation
specificity factor protein.
Length = 1442
Score = 36.7 bits (81), Expect = 0.17
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +3
Query: 99 ATLVLSXGAPVASVTASGFLGTPPPLRCHAMG-HAALVQVSPXGLSXLRADKRVNAWKAP 275
+T++L G + + SGF P + +G + +VQVSP G+ L +++
Sbjct: 582 STMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVD 641
Query: 276 GKKSLVSCAVNQSQVVIALTGGXLVYF 356
+V CAV VVI G + F
Sbjct: 642 LGAPIVQCAVADPYVVIMSAEGHVTMF 668
>BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and
polyadenylation specific factor 1, 160kDa protein.
Length = 1443
Score = 36.7 bits (81), Expect = 0.17
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +3
Query: 99 ATLVLSXGAPVASVTASGFLGTPPPLRCHAMG-HAALVQVSPXGLSXLRADKRVNAWKAP 275
+T++L G + + SGF P + +G + +VQVSP G+ L +++
Sbjct: 582 STMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVD 641
Query: 276 GKKSLVSCAVNQSQVVIALTGGXLVYF 356
+V CAV VVI G + F
Sbjct: 642 LGAPIVQCAVADPYVVIMSAEGHVTMF 668
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,894,692
Number of Sequences: 237096
Number of extensions: 2930253
Number of successful extensions: 5522
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5512
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16734053920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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