Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F12
         (1191 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   343   2e-94

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  343 bits (843), Expect = 2e-94
 Identities = 175/331 (52%), Positives = 221/331 (66%), Gaps = 4/331 (1%)
 Frame = +3

Query: 87   SFVXATLVLSXGAPVASVTASGFLGTPPPLRCHAMGHAALVQVSPXGLSXLRADKRVNAW 266
            SFV ATL L+ G  V   + SGFL T P + C  +G  +LVQ+   G+  +RADKR+N W
Sbjct: 477  SFVNATLALTIGDTVEEASDSGFLPTTPTIGCAMIGDDSLVQIYSEGIRHIRADKRINEW 536

Query: 267  KAPGKKSLVSCAVNQSQVVIALTGGXLVYFEMDPTGQLNEYTEXKXLSSAVCCMALGSVA 446
            KAP ++ +V CAVN+ QV +ALTGG LVYFE+D  G LNE+TE K  ++ + CM    ++
Sbjct: 537  KAPPRRQIVKCAVNRRQVAVALTGGELVYFELDLNGTLNEFTERKLFNADIACMTFSEIS 596

Query: 447  AGEQRAWFLAVGLNDNTVRIISLDPADCLSPRSMQALPAGAESLCIIEQPFESG-AKSAL 623
             GE  + FLA+G  DN VRIISLDP D L P S Q+LP   ES+ +I+ P E G   +A+
Sbjct: 597  EGELNSRFLALGTVDNAVRIISLDPNDMLMPLSTQSLPCPPESILLIDTPNEDGKGVAAV 656

Query: 624  HLNIGLSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWLGY 803
            HLNIGL NG L R T+D+V+G + DTRTRYLG+RPVKLFKV+ Q   A+L  SSR+WL Y
Sbjct: 657  HLNIGLQNGCLFRNTVDNVTGAIMDTRTRYLGTRPVKLFKVQCQGRSAILCTSSRSWLLY 716

Query: 804  HYQNRFHLTPLSYECLEYAAGFSSXQCTEGIVXISSNTLRIWAXKKLGAVFNQTFVPXKY 983
            H+Q RFHLTPLSY  LEYAA F S QC+EGIV IS++TLRI A +KLG  FN      K 
Sbjct: 717  HFQRRFHLTPLSYANLEYAASFCSNQCSEGIVAISASTLRIIAAEKLGVAFNVQSFEHKM 776

Query: 984  TPRKL**ILXQSHYSL---XTDHXAYPEEMK 1067
            TPR++   +  S   L    TDH +Y E  K
Sbjct: 777  TPRRV--AVHPSMPCLIVIETDHASYTEVTK 805


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,190,029
Number of Sequences: 27780
Number of extensions: 435251
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)