Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F11
         (1232 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       34   0.20 
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    33   0.46 
05_01_0141 - 937428-937717,938483-938705                               31   2.5  
05_01_0142 - 940421-940701,941262-941574                               29   9.9  
02_05_1162 - 34593101-34594624                                         29   9.9  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 34.3 bits (75), Expect = 0.20
 Identities = 20/61 (32%), Positives = 20/61 (32%)
 Frame = -1

Query: 1160 PPPXXXXXXXXXXXPPXPPXKXXXXXPXFXXKXXXXGPPPPXFXKKXXXGPPGXXGGXFS 981
            PPP           PP PP       P    K     PPPP   KK    PP   GG   
Sbjct: 330  PPPKAAPPPPPPKGPPPPPPAKGPPPPP-PPKGPSPPPPPPPGGKKGGPPPPPPKGGASR 388

Query: 980  P 978
            P
Sbjct: 389  P 389



 Score = 29.9 bits (64), Expect = 4.3
 Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
 Frame = -1

Query: 1160 PPPXXXXXXXXXXXPPXPPXKXXXXXP---XFXXKXXXXGPPPPXFXKKXXXGPPGXXGG 990
            PPP           PP PP K     P            GPPPP   K     PP   GG
Sbjct: 313  PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372



 Score = 28.7 bits (61), Expect = 9.9
 Identities = 18/69 (26%), Positives = 18/69 (26%)
 Frame = -1

Query: 1199 PXXXXXKKKKXXXPPPXXXXXXXXXXXPPXPPXKXXXXXPXFXXKXXXXGPPPPXFXKKX 1020
            P      K     PPP           PP PP       P         G PPP   K  
Sbjct: 326  PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385

Query: 1019 XXGPPGXXG 993
               PP   G
Sbjct: 386  ASRPPAAPG 394


>09_06_0277 - 21983049-21983080,21983250-21984788,21986619-21986655,
            21987612-21987665,21987781-21987893,21988272-21988660,
            21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 33.1 bits (72), Expect = 0.46
 Identities = 19/79 (24%), Positives = 24/79 (30%)
 Frame = -1

Query: 1115 PXPPXKXXXXXPXFXXKXXXXGPPPPXFXKKXXXGPPGXXGGXFSPXKXKTGVXXXNPPX 936
            P PP +     P +        P PP +  +   GPPG  GG   P           PP 
Sbjct: 708  PSPP-EYAPEPPVYAPYPPGITPSPPEYAPEPPPGPPGGGGGYLPPVVFPPPYASRGPPG 766

Query: 935  XXKXXVLIKKGXPXNFXPP 879
                  + K   P     P
Sbjct: 767  RRAVWCVAKPSVPEGIIQP 785


>05_01_0141 - 937428-937717,938483-938705
          Length = 170

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 410 GGGGGKXFXXPPPGGXXPPPXXXGP 484
           GGGGG  +  PP  G  PPP    P
Sbjct: 23  GGGGGHGYPYPPQQGYYPPPPTAYP 47


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = +1

Query: 439 PPPGGXXPPPXGXXXXXG*XXPPKGXXXXKXXGKXXPKGXPXGXG 573
           PPP G  PPP G         PP         G   P G P   G
Sbjct: 41  PPPPGAYPPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPGG 85


>02_05_1162 - 34593101-34594624
          Length = 507

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 14/52 (26%), Positives = 18/52 (34%)
 Frame = -2

Query: 424 SPPPPPXXXFFXXXXKKXGXXXXXFXGGVXXPNPXGPPXFKKXKXXFXGPPP 269
           +PPPPP         ++           V  P P  PP  K+       PPP
Sbjct: 161 TPPPPPQPSGLLEPKQEQRQWFVDALNSVHQPPPPSPPQPKQESVSVQSPPP 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,562,693
Number of Sequences: 37544
Number of extensions: 562754
Number of successful extensions: 1560
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3794526552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)