Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F11
         (1232 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    34   0.24 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    34   0.24 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.7  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    30   2.9  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    30   2.9  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    30   3.9  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
            protein Y63D3A.5 protein.
          Length = 486

 Score = 33.9 bits (74), Expect = 0.24
 Identities = 27/98 (27%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
 Frame = -1

Query: 1046 PPPXFXKKXXXGPPGXXGGXFSPXKXKTGVXXXNPPXXXKXXVLIKKGXPXNFXPPFGGF 867
            PP  F      GPP   GG   P + +       P    +         P    PP G F
Sbjct: 289  PPQQFGGPPPSGPPSEYGGYAPPQQQQQQFGAPPPQGAPQQGFGAPPQGPPQGGPPQGSF 348

Query: 866  -XPXPXFXXXFSPKXKFXPPKXXGVXPG----PPXXGP 768
              P P      SP+    PP      PG    PP  GP
Sbjct: 349  GAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGP 386



 Score = 32.3 bits (70), Expect = 0.73
 Identities = 23/64 (35%), Positives = 24/64 (37%)
 Frame = +2

Query: 314 GXXGVGGXNPPXKXXXXXPXFFXXPXKKXXXGGGGGGKXFXXPPPGGXXPPPXXXGPXXX 493
           G  G GG  PP       P  +  P       GG GG  F  PPPGG    P   GP   
Sbjct: 402 GPGGPGGYGPPPPGGPGAPGSYGPPQ------GGPGG--FGPPPPGG----PGAYGPPPT 449

Query: 494 XFXP 505
            F P
Sbjct: 450 GFPP 453


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
            protein D1007.7 protein.
          Length = 988

 Score = 33.9 bits (74), Expect = 0.24
 Identities = 27/92 (29%), Positives = 29/92 (31%), Gaps = 2/92 (2%)
 Frame = -1

Query: 1049 PP--PPXFXKKXXXGPPGXXGGXFSPXKXKTGVXXXNPPXXXKXXVLIKKGXPXNFXPPF 876
            PP  PP F       PPG  G  + P     GV    P           K  P  F   F
Sbjct: 695  PPGVPPMFNLNAPP-PPGIPG--YPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGF 751

Query: 875  GGFXPXPXFXXXFSPKXKFXPPKXXGVXPGPP 780
                P P F     P   F PP   G+   PP
Sbjct: 752  NAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPP 783



 Score = 29.9 bits (64), Expect = 3.9
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
 Frame = -1

Query: 1160 PPPXXXXXXXXXXXPPXPPX--KXXXXXPXFXX-KXXXXGPPPPXFXKKXXXGPP 1005
            PPP           PP P          P F   +    GPPPP F ++   GPP
Sbjct: 757  PPPFGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGRGGHGGPPPPHFDRRGGGGPP 811


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
 Frame = +2

Query: 314 GXXGVGGXNPPXKXXXXXPXFFXXPXKKXXXGGG---GGGKXFXXPPPGGXXPPPXXXGP 484
           G   + G  PP       P     P      GG     GG     PPPGG  PPP    P
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
 Frame = +2

Query: 314 GXXGVGGXNPPXKXXXXXPXFFXXPXKKXXXGGG---GGGKXFXXPPPGGXXPPPXXXGP 484
           G   + G  PP       P     P      GG     GG     PPPGG  PPP    P
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 19/60 (31%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
 Frame = +2

Query: 314 GXXGVGGXNPPXKXXXXXPXFFXXPXKKXXXGGG---GGGKXFXXPPPGGXXPPPXXXGP 484
           G   + G  PP       P     P      GG     GG     PPPGG  PPP    P
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical protein
            C08B11.5 protein.
          Length = 388

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 31/132 (23%), Positives = 37/132 (28%), Gaps = 5/132 (3%)
 Frame = -1

Query: 1160 PPPXXXXXXXXXXXPPXPPXKXXXXXPXFXXKXXXXGPPPPXFXKKXXXGPPGXXGGXFS 981
            PP            PP PP       P          PPPP    +   GPPG  G    
Sbjct: 261  PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPP 319

Query: 980  PXKXKTGVXXXN-----PPXXXKXXVLIKKGXPXNFXPPFGGFXPXPXFXXXFSPKXKFX 816
            P   + G          PP   +    +    P  +     G  P P       P     
Sbjct: 320  PPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP------PPSRPPA 373

Query: 815  PPKXXGVXPGPP 780
            PP   G+ P PP
Sbjct: 374  PPSGHGMIPPPP 385


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA binding
            protein protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 31/132 (23%), Positives = 37/132 (28%), Gaps = 5/132 (3%)
 Frame = -1

Query: 1160 PPPXXXXXXXXXXXPPXPPXKXXXXXPXFXXKXXXXGPPPPXFXKKXXXGPPGXXGGXFS 981
            PP            PP PP       P          PPPP    +   GPPG  G    
Sbjct: 271  PPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPP 329

Query: 980  PXKXKTGVXXXN-----PPXXXKXXVLIKKGXPXNFXPPFGGFXPXPXFXXXFSPKXKFX 816
            P   + G          PP   +    +    P  +     G  P P       P     
Sbjct: 330  PPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP------PPSRPPA 383

Query: 815  PPKXXGVXPGPP 780
            PP   G+ P PP
Sbjct: 384  PPSGHGMIPPPP 395


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical protein
            T24B8.4 protein.
          Length = 866

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 22/84 (26%), Positives = 23/84 (27%), Gaps = 3/84 (3%)
 Frame = -1

Query: 1199 PXXXXXKKKKXXXPPPXXXXXXXXXXXP---PXPPXKXXXXXPXFXXKXXXXGPPPPXFX 1029
            P      K     PPP           P   P PP       P          PPPP F 
Sbjct: 53   PPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFG 112

Query: 1028 KKXXXGPPGXXGGXFSPXKXKTGV 957
                  PP   G    P + KT V
Sbjct: 113  APPPPPPPSGLGVAPQPPRPKTPV 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,730
Number of Sequences: 27780
Number of extensions: 349395
Number of successful extensions: 1013
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)