Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F10
         (1195 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-4|CAA16407.1|  386|Caenorhabditis elegans Hypothetical ...    41   0.002
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    32   0.92 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    32   0.92 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    32   0.92 
Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical pr...    31   2.1  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   2.1  
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    30   3.7  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    30   3.7  
U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical p...    29   8.6  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     29   8.6  
AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated...    29   8.6  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    29   8.6  

>AL021497-4|CAA16407.1|  386|Caenorhabditis elegans Hypothetical
           protein Y51A2D.8 protein.
          Length = 386

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +2

Query: 218 FEIFVKAHNREXKDXADXXLHYQSFKXHLAEXNQLN---EXXPYTT-FGINKFADYTPEE 385
           FE F K +NR+ KD ++    + +F       ++LN   +   Y T FGINKF+D +  E
Sbjct: 43  FEDFKKKYNRKYKDESENQQRFNNFVKSYNNVDKLNAKSKAAGYDTQFGINKFSDLSTAE 102

Query: 386 QQSRLGLRLPAKKT 427
              RL   +P+  T
Sbjct: 103 FHGRLSNVVPSNNT 116


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -2

Query: 756 PXXPXKXFFPXXXXGGXPXPPXFFXXLGAPXPPXKGXPPP 637
           P  P K   P    G  P PP      G+P PP  G PPP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPA----AGSPPPPRTGSPPP 274


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -2

Query: 756 PXXPXKXFFPXXXXGGXPXPPXFFXXLGAPXPPXKGXPPP 637
           P  P K   P    G  P PP      G+P PP  G PPP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPA----AGSPPPPRTGSPPP 295


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -2

Query: 756 PXXPXKXFFPXXXXGGXPXPPXFFXXLGAPXPPXKGXPPP 637
           P  P K   P    G  P PP      G+P PP  G PPP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPA----AGSPPPPRTGSPPP 280


>Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical
           protein C50F4.3 protein.
          Length = 374

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 218 FEIFVKAHNREXKDXADXXLHYQSFKXHLAEXNQLNEXXPY----TTFGINKFADYTPEE 385
           FE F+  + R  KD  +    +Q F        ++N+        T +GINKF+D + +E
Sbjct: 47  FEDFIVKYKRNYKDEIEKKFRFQQFVATHNRVGKMNKAAKKAGHDTKYGINKFSDLSKKE 106


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -2

Query: 756 PXXPXKXFFPXXXXGGXPXPPXFFXXLGAPXPPXKGXPPP 637
           P  P     P    GG P PP  F     P PP  G  PP
Sbjct: 67  PPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPP 106



 Score = 29.5 bits (63), Expect = 4.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 729 PXXXXGGXPXPPXFFXXLGAPXPPXKGXPPP 637
           P    GG P PP     +  P PP  G PPP
Sbjct: 87  PPMFAGGIPPPPPMMGGI-PPPPPMFGAPPP 116


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 747 PXKXFFPXXXXGGXPXPPXFFXXLGAPXPPXKGXPP 640
           P   FFP    G  P PP  F   G P PP    PP
Sbjct: 291 PPFGFFPPPPRGHFPPPPPHFMGRGMP-PPFMPPPP 325


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 747 PXKXFFPXXXXGGXPXPPXFFXXLGAPXPPXKGXPP 640
           P   FFP    G  P PP  F   G P PP    PP
Sbjct: 291 PPFGFFPPPPRGHFPPPPPHFMGRGMP-PPFMPPPP 325


>U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical
           protein R09F10.1 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 215 LFEIFVKAHNREXKDXADXXLHYQSFKXHLAEXNQLNEXXPYTTFGINKFADYTPEEQQ 391
           +F  F+   +R+     +    YQ F  ++ E     E        +N+F D+T EE Q
Sbjct: 81  MFNDFILKFDRKYTSVEEFEYRYQIFLRNVIEFEAEEERNLGLDLDVNEFTDWTDEELQ 139


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -2

Query: 756 PXXPXKXFFPXXXXGGXPXPPXFFXXLGAPXPPXKGXPP 640
           P  P     P    G  P PP      GAP PP    PP
Sbjct: 218 PPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 256


>AC025722-6|AAO12398.1|  310|Caenorhabditis elegans Uncoordinated
           protein 34, isoform b protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -2

Query: 756 PXXPXKXFFPXXXXGGXPXPPXFFXXLGAPXPPXKGXPP 640
           P  P     P    G  P PP      GAP PP    PP
Sbjct: 204 PPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 242


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -2

Query: 756 PXXPXKXFFPXXXXGGXPXPPXFFXXLGAPXPPXKGXPP 640
           P  P     P    G  P PP      GAP PP    PP
Sbjct: 204 PPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPPP 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,810
Number of Sequences: 27780
Number of extensions: 221628
Number of successful extensions: 668
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3276419812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)