Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_F08
(1182 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 35 0.025
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 30 0.72
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.2
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 28 2.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 3.5
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 3.8
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 27 5.1
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 27 5.1
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.7 bits (76), Expect = 0.025
Identities = 18/37 (48%), Positives = 18/37 (48%)
Frame = +2
Query: 491 GGXGGFXLGXPXPPPXKXKGGXGGXGGXXGXXXXGGG 601
GG GGF G PPP GG GG GG G GG
Sbjct: 188 GGFGGFGGGSGGPPP--GPGGFGGFGGFGGEGHHHGG 222
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.9 bits (64), Expect = 0.72
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +2
Query: 545 KGGXGGXGGXXGXXXXGGGXXXXKKGGXXXKKNFXXRGPKXGKK 676
+GG GG GG G GGG + G N P G K
Sbjct: 453 RGGFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRGSVAPFSGNK 496
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +2
Query: 491 GGXGGFXLGXPXPPPXKXKGGXGGXGGXXGXXXXGGGXXXXKKGG 625
GG GG G +GG GG GG G G KGG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 624 PPFXXXXXPPPXXXXPXXPPXPPXPP 547
PP PPP P P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 6.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -1
Query: 600 PPPXXXXPXXPPXPPXPPF 544
PPP P PP PP P +
Sbjct: 14 PPPGFEPPSQPPPPPPPGY 32
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 600 PPPXXXXPXXPPXPPXPPFXFXGG 529
PPP PP PP PP GG
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -1
Query: 600 PPPXXXXPXXPPXPPXPPFXFXGGGXGXPKXXPPXPP 490
PPP PP PP PP GG P P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Frame = -1
Query: 600 PPPXXXXPXXP----PXPPXPPFXFXGGGXGXPKXXPPXPP 490
P P P P P PP PP G G P PP PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAG---PPPPPPPPP 783
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = +2
Query: 503 GFXLGXPXPPPXKXKGGXG-GXGGXXGXXXXGGGXXXXKKGGXXXKKNFXXRGP 661
G G PPP +GG G G GG G G GG + F P
Sbjct: 68 GITEGNAAPPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGAQFFSASDP 121
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.4 bits (48), Expect(2) = 3.5
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -1
Query: 570 PPXPPXPPFXFXGGG 526
PP PP PP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 22.2 bits (45), Expect(2) = 3.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -1
Query: 579 PXXPPXPPXPP 547
P PP PP PP
Sbjct: 942 PAFPPPPPPPP 952
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 176 TKKXKKXKKXKKKXXKKKKK 117
+KK KK KK KKK KKK+
Sbjct: 459 SKKEKKDKKEKKKEKSKKKR 478
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 190 FFFXKQKKXKKXKKXKKKXXKKKKKK 113
+F K++K +K + KK+ K+KKK+
Sbjct: 280 YFLKKEEKERKKRAEKKEQQKEKKKE 305
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 178 KQKKXKKXKKXKKKXXKKKKKK 113
KQK+ KK K+ KK +K KKK
Sbjct: 219 KQKELKKGKREKKDEEEKPKKK 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.153 0.492
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,609
Number of Sequences: 5004
Number of extensions: 28937
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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