Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F06
         (1165 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)         74   2e-13
SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  

>SB_39782| Best HMM Match : Chromo_shadow (HMM E-Value=1.4e-23)
          Length = 226

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 30/56 (53%), Positives = 45/56 (80%)
 Frame = +2

Query: 500 KGLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEERLTW 667
           +G +A+ I+GA++  G++ FLI+W  +D A+L+P+KVAN+K PQ VI FYEER+TW
Sbjct: 127 EGWEADTILGATEVDGQIHFLIQWKSTDRADLIPSKVANLKWPQIVIKFYEERVTW 182



 Score = 28.7 bits (61), Expect = 9.4
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +2

Query: 176 VEXVLNKRTVXXXXXXXXXXXXXXXXARTWXPVENLXCEELIKTFEXNR 322
           VE V++KR +                  TW   E L C ELI+ +E  +
Sbjct: 30  VEKVMDKRVINGGIEYLLKWKGYPDSENTWESEEGLQCPELIEEYEKKK 78


>SB_24939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = -1

Query: 172 RCCRARCCTGTPFXXXXDPCXAKKERHXCTKAREXNGSGTASER 41
           RCC+AR   G P       C   + R  C  AR   G   A  R
Sbjct: 394 RCCKARYRKGCPLARYRKGCPLARYRKGCPLARYRKGCPLARYR 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,244,737
Number of Sequences: 59808
Number of extensions: 340097
Number of successful extensions: 530
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3604647472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)