Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F06
         (1165 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical pr...    52   6e-07
AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromat...    52   6e-07
Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical pr...    52   1e-06
AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain...    52   1e-06
Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical pr...    34   0.22 
Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical pr...    34   0.22 
AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain...    34   0.22 

>Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical
           protein K08H2.6 protein.
          Length = 184

 Score = 52.4 bits (120), Expect = 6e-07
 Identities = 27/53 (50%), Positives = 34/53 (64%)
 Frame = +2

Query: 503 GLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEERL 661
           G   + IIG + A GEL FL K++D D   L+P + ANV+ P QVI FYE RL
Sbjct: 119 GKTLKTIIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170



 Score = 34.3 bits (75), Expect = 0.17
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 173 VVEXVLNKRTVXXXXXXXXXXXXXXXXARTWXPVENLXCEELIKTFE 313
           VVE VLNKR                    +W P+ENL C+ +I+ +E
Sbjct: 38  VVEKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEYE 84


>AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromatin
           protein 1 homolog protein.
          Length = 184

 Score = 52.4 bits (120), Expect = 6e-07
 Identities = 27/53 (50%), Positives = 34/53 (64%)
 Frame = +2

Query: 503 GLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEERL 661
           G   + IIG + A GEL FL K++D D   L+P + ANV+ P QVI FYE RL
Sbjct: 119 GKTLKTIIGITKAPGELHFLCKFSD-DSVHLIPLREANVRFPSQVIKFYETRL 170



 Score = 34.3 bits (75), Expect = 0.17
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 173 VVEXVLNKRTVXXXXXXXXXXXXXXXXARTWXPVENLXCEELIKTFE 313
           VVE VLNKR                    +W P+ENL C+ +I+ +E
Sbjct: 38  VVEKVLNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEYE 84


>Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical
           protein K01G5.2a protein.
          Length = 175

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = +2

Query: 500 KGLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEERLTWHTP 676
           +G + + I+G +   GEL FL K++D D A L+PAK  N + P QVI +YE +LT   P
Sbjct: 113 EGKQLKCIVGLTKGPGELHFLCKFSD-DTARLLPAKEVNSRYPSQVIRYYESKLTIQDP 170


>AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 175

 Score = 51.6 bits (118), Expect = 1e-06
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = +2

Query: 500 KGLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYEERLTWHTP 676
           +G + + I+G +   GEL FL K++D D A L+PAK  N + P QVI +YE +LT   P
Sbjct: 113 EGKQLKCIVGLTKGPGELHFLCKFSD-DTARLLPAKEVNSRYPSQVIRYYESKLTIQDP 170


>Z92803-4|CAB54267.2|  303|Caenorhabditis elegans Hypothetical
           protein K01G5.2c protein.
          Length = 303

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 500 KGLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYE 652
           +G + + I+G +   GEL FL K++D D A L+PAK  N +    V A+ E
Sbjct: 113 EGKQLKCIVGLTKGPGELHFLCKFSD-DTARLLPAKEVNSRYRPFVDAYGE 162


>Z92803-3|CAB07243.2|  301|Caenorhabditis elegans Hypothetical
           protein K01G5.2b protein.
          Length = 301

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 500 KGLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYE 652
           +G + + I+G +   GEL FL K++D D A L+PAK  N +    V A+ E
Sbjct: 113 EGKQLKCIVGLTKGPGELHFLCKFSD-DTARLLPAKEVNSRYRPFVDAYGE 162


>AF123573-1|AAD21196.1|  301|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 301

 Score = 33.9 bits (74), Expect = 0.22
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 500 KGLKAEKIIGASDATGELMFLIKWTDSDEAELVPAKVANVKCPQQVIAFYE 652
           +G + + I+G +   GEL FL K++D D A L+PAK  N +    V A+ E
Sbjct: 113 EGKQLKCIVGLTKGPGELHFLCKFSD-DTARLLPAKEVNSRYRPFVDAYGE 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,547
Number of Sequences: 27780
Number of extensions: 260258
Number of successful extensions: 489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3172075232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)