Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F05
         (1165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    27   5.0  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   6.6  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 724 KIYSEII*ISFTTEHAIVNSDVNIQIRCQNSREYLRNIF 608
           K + ++  I F  EH   +S V I + CQ+    +RN+F
Sbjct: 880 KYFLKLCSIPFYAEHIDFSSYVQISLLCQDENFDVRNLF 918


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 38  RFVIVVRLPIVLYIICCPCKTDVTIPLKYM 127
           +F + ++L I + ++ CPC   ++ P   M
Sbjct: 469 KFAVCLKLTISVVVVACPCALGLSTPTAVM 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,246
Number of Sequences: 5004
Number of extensions: 62564
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 623552966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)