Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F05
         (1165 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    26   0.73 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   2.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   9.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.0  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 0.73
 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
 Frame = -1

Query: 925 GGERLSDSLYLSKXTTFHKIIFYYISNEILFICFSN*QSLKYIRQQLN*YFISDRTIR-- 752
           G E + ++  L+K  + + ++F  +       C++  QSL+  RQ L     +DRT++  
Sbjct: 295 GSEDILNTQSLAKAVSKNGVLFVGLVGNSAVGCWNEHQSLQ--RQNLEMVAQNDRTLQMI 352

Query: 751 -----EYRSPN---SNIKIYSEII*ISFTTEHAIVNSD-----VNIQIRCQNSREYLRNI 611
                +   P+   SN  +  E + +       IVN D     VN +I   N +E +RN 
Sbjct: 353 AGMKIKEELPHFVGSNKPVKDEYMLVLSNRMQKIVNDDFNFDDVNFRILGANVKELIRNT 412

Query: 610 FSMFNN 593
             + NN
Sbjct: 413 HCVNNN 418


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 670 NSDVNIQIRCQNSREYLRN 614
           + D+N + +C   REYL N
Sbjct: 336 SDDINTKAKCLQFREYLNN 354


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 904 SLYLSKXTTFHKIIFYYISNEILFIC---FSN*QSLKYIRQQLN 782
           SL +     ++ I    ++N  LF+    FSN +S KY  Q LN
Sbjct: 11  SLIILNDEIYNIIASPQLNNPTLFMIGGVFSNNKSKKYFEQTLN 54


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 236 IAIRFKNDIYKVISVIKE 289
           +++RF N +YK+I  IK+
Sbjct: 554 VSLRFYNVVYKLIDNIKK 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,594
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39524328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)