Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_F04
(1216 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 76 9e-15
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 75 2e-14
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 71 3e-13
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.32
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 28 3.0
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 6.9
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 9.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 9.2
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 76.2 bits (179), Expect = 9e-15
Identities = 32/61 (52%), Positives = 50/61 (81%)
Frame = +2
Query: 152 LAVLGGKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGREXLSSMPVG 331
L +GGK +P+A+ +E +LS+VGIEA++E ++ +I ELNGKD+++LIAAG E L+++P G
Sbjct: 9 LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68
Query: 332 G 334
G
Sbjct: 69 G 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 74.9 bits (176), Expect = 2e-14
Identities = 33/61 (54%), Positives = 50/61 (81%)
Frame = +2
Query: 152 LAVLGGKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGREXLSSMPVG 331
L +GGK +P+A+ +E +LS+VGIEA+AE ++ +I+ELNGK++E+LIAAG E LS++P
Sbjct: 9 LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68
Query: 332 G 334
G
Sbjct: 69 G 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 70.9 bits (166), Expect = 3e-13
Identities = 30/61 (49%), Positives = 50/61 (81%)
Frame = +2
Query: 152 LAVLGGKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGREXLSSMPVG 331
L +GGK +P+A+ +E +LS+VGIE+++E ++ +I EL+GKD+++LIAAG E L+++P G
Sbjct: 9 LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSG 68
Query: 332 G 334
G
Sbjct: 69 G 69
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.32
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -2
Query: 333 PPTGIDDSXSRPAA------ISCSTSLPLSSVITCLSXSASASIPTELRSCSTXAAAGVG 172
PPTG S S P + STS+P+ T + + S+ +PT SC+T + G
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTG 238
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = -2
Query: 333 PPTGIDDSXSRPAA------ISCSTSLPLSSVITCLSXSASASIPTELRSCST 193
PPTG S S P + STS+P+ T + + S +PT SC+T
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTT 174
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 300 PAAISCSTSLPLSSVITCLSXSASASIPTELRSCST 193
P + STS+P+ T + + S+ +PT SC+T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTT 287
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 330 PTGIDDSXSRPAAISCSTSLPLSSVITCLSXSASASIPTELRSC 199
PT S AI+ S + PL V T L S+SIP E+R C
Sbjct: 204 PTSHIISGGLSGAIASSLTTPLDVVKTLLQTRGSSSIP-EVRKC 246
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 282 STSLPLSSVITCLSXSASASIPTELRSCSTXAAAGVGLPPSTA 154
S S +SSV+ + S S IP+ + S + +A P ST+
Sbjct: 201 SASATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTS 243
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 306 SRPAAISCSTSLPLSSVITCLSXSASASIPTELRS 202
S P+A+S +TS+P S+ + +S S S S T L S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSLSS 171
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 182 AAAXVEQLLSSVGIEADAEXLKQVITELNG 271
A V+++ VG+E D+E K + E+ G
Sbjct: 1738 AQIFVDEIFGEVGVEKDSEDYKSNVKEIKG 1767
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,589
Number of Sequences: 5004
Number of extensions: 20439
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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