Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_F04
(1216 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 72 8e-13
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 62 6e-10
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 58 1e-08
07_01_1001 - 8460467-8460799 45 1e-04
07_03_0321 + 16757414-16757743 43 6e-04
01_06_0098 - 26416768-26416998 32 1.0
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 30 4.2
05_02_0056 - 6191998-6192057,6192132-6192320,6192492-6192649,619... 29 7.4
06_03_0854 + 25400855-25403741,25406174-25407708 29 9.8
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 72.1 bits (169), Expect = 8e-13
Identities = 32/62 (51%), Positives = 48/62 (77%)
Frame = +2
Query: 152 LAVLGGKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGREXLSSMPVG 331
LAVLGG +P+A ++ +L SVG+EA+ E L+ +++EL GKD+ ++IAAGRE +S+P G
Sbjct: 9 LAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSG 68
Query: 332 GG 337
GG
Sbjct: 69 GG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 62.5 bits (145), Expect = 6e-10
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = +2
Query: 152 LAVLGGKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGREXLSSMPVG 331
LA L G P P+A + +L SVG E D ++ ++++L GKD+ ++IA+GRE +S+P G
Sbjct: 202 LATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASVPCG 261
Query: 332 GG 337
GG
Sbjct: 262 GG 263
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 58.0 bits (134), Expect = 1e-08
Identities = 25/62 (40%), Positives = 41/62 (66%)
Frame = +2
Query: 152 LAVLGGKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGREXLSSMPVG 331
+A L G +P A + +L SVG E D ++ ++++++GKD+ +LIA GRE +S+P G
Sbjct: 9 MAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASVPSG 68
Query: 332 GG 337
GG
Sbjct: 69 GG 70
>07_01_1001 - 8460467-8460799
Length = 110
Score = 44.8 bits (101), Expect = 1e-04
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +2
Query: 152 LAVLGGKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGREXLSSMPVG 331
+A +GG +P V +L +VG + D + L + ++ GKD+ +++AAG E L+ VG
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLAFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 42.7 bits (96), Expect = 6e-04
Identities = 18/55 (32%), Positives = 33/55 (60%)
Frame = +2
Query: 152 LAVLGGKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGREXLS 316
+A +GG +P V +L +VG + D + L + ++ GKD+ +++AAG E L+
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 167 GKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKD 277
G P P A V+ ++ +V IEAD+ K ++ L GKD
Sbjct: 13 GPPPPPPAVVK-IIETVHIEADSAEFKSIVQRLTGKD 48
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 29.9 bits (64), Expect = 4.2
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 137 WPRSF-LAVLGGKPTPA---AAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGR 304
W R F +A+L P+PA A + QL SVG E A ++N EQL+ + +
Sbjct: 1161 WMRHFSIALLKESPSPALRTCARLAQLQPSVGRELFAAGFASCWAQMNETSQEQLVRSLK 1220
Query: 305 EXLSSMPV 328
SS +
Sbjct: 1221 TAFSSQNI 1228
>05_02_0056 -
6191998-6192057,6192132-6192320,6192492-6192649,
6193714-6193804,6193984-6194158,6194227-6194369,
6194592-6194810,6194899-6195028,6195127-6195193,
6195263-6195357,6195454-6195525,6195613-6195668,
6196453-6196455,6197948-6198017,6198173-6198246,
6198334-6198468,6200273-6200362
Length = 608
Score = 29.1 bits (62), Expect = 7.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 223 DTDGAEELLNXSGSWRGLATQHSQERTRPRKRIFEG 116
+TDGA++L+ G RG T + +P+K+I G
Sbjct: 331 NTDGAQKLIYQVGQKRGRLTMDEDDDEQPKKKIRMG 366
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 336 PPPTGIDDSXSRPAAISCSTSLPLSSVITCLSXSASAS 223
PPP I + A +S P+S+V + L+ SASA+
Sbjct: 1120 PPPAPIPAATPAKALVSAPAPAPISTVSSTLAASASAA 1157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,541,636
Number of Sequences: 37544
Number of extensions: 168794
Number of successful extensions: 551
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3724688640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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