Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F04
         (1216 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   7e-11
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)        31   2.4  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   4.3  
SB_48248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   9.9  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 65.7 bits (153), Expect = 7e-11
 Identities = 29/61 (47%), Positives = 44/61 (72%)
 Frame = +2

Query: 152 LAVLGGKPTPAAAXVEQLLSSVGIEADAEXLKQVITELNGKDVEQLIAAGREXLSSMPVG 331
           LA LG    P+A  ++ +L SVGIE+D E L +VI+EL+GK V+++I AG+  L+++P G
Sbjct: 658 LATLGNNKNPSAKDIKGILDSVGIESDMERLNKVISELSGKSVDEIIQAGKSKLATVPTG 717

Query: 332 G 334
           G
Sbjct: 718 G 718


>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
          Length = 432

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 303 RPAAISCSTSLPLSSVITCLSXSASASIPTELRSCST 193
           +P  +SCS    LS+ ++C S + S ++  +L++ ST
Sbjct: 304 QPLVVSCSYLKALSTTVSCQSKALSTTVSCQLKALST 340


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -2

Query: 330  PTGIDDSXSRPAAISCSTSLPLSSVITCLSXSASASIPTELRSCSTXAAAGVGLPPSTAR 151
            PT  D++ + P +   +T++P+S     +  +ASA++ T   +  T A +  G P  TA 
Sbjct: 2798 PTDTDEATASPMSTYGATAIPMS-----MDGTASATMSTFTDAADTTAPSKTGAPEITAA 2852

Query: 150  KE 145
             E
Sbjct: 2853 PE 2854


>SB_48248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -2

Query: 279 TSLPLSSVITCLSXSASASIPTELRSCSTXAAAGVGLPPSTARKERGHXNAFLKAELNTX 100
           +SL  S+V+TCL  ++     + +      A + +  PP+     RG       +++N  
Sbjct: 39  SSLKQSNVLTCLKRTSQHLRDSRMNQRDATATSPIATPPT----PRGVNKVNKSSKVNKS 94

Query: 99  RGNAER-RTXGXEQXRPARKREYERRP 22
            GN  R    G     P R RE +  P
Sbjct: 95  SGNLVRLHIAGTASKVPERAREEQASP 121


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 306 SRPAAISCSTSLPLSSVIT-CLSXSASASIPTE-LRSCSTXAAAGVGLPPS 160
           SRP     STSL  S+  T   S +AS S+ T  + + ST +AA   L P+
Sbjct: 128 SRPPPRPASTSLTTSAAFTSSTSSAASTSLTTSPVSTSSTSSAASTSLTPA 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,468,601
Number of Sequences: 59808
Number of extensions: 168710
Number of successful extensions: 457
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3775227200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)