Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_F03
(1182 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 218 2e-55
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 122 1e-26
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 91 4e-17
UniRef50_UPI00015C63F8 Cluster: hypothetical protein CKO_pCKO3p0... 73 1e-11
UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11; ... 73 1e-11
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 71 6e-11
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 62 2e-08
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 58 6e-07
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ... 55 3e-06
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 54 1e-05
UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4... 52 4e-05
UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2... 48 6e-04
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 40 0.13
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 40 0.13
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 36 2.0
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 36 2.7
UniRef50_A7SYZ9 Cluster: Predicted protein; n=1; Nematostella ve... 35 3.6
UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4; ... 35 4.7
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 218 bits (533), Expect = 2e-55
Identities = 100/113 (88%), Positives = 101/113 (89%)
Frame = +3
Query: 558 SKRPGTVKRPRCWRFXIGSAPLTSITKIDAQXXGGETRQDYKDTRRFPLEAPSCALLFRP 737
SK+ T R RF IGSAPLTSITKIDAQ GGETRQDYKDTRRFPLEAPSCALLFRP
Sbjct: 2 SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP 61
Query: 738 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPXWAVCTNPPFSPTAAPYP 896
CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAP WAVCTNPPFSPTAAPYP
Sbjct: 62 CRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYP 114
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 122 bits (295), Expect = 1e-26
Identities = 71/116 (61%), Positives = 75/116 (64%)
Frame = +3
Query: 402 VCXLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQEXTCXQKASKRPGTVK 581
+C G +PLPRSLTR ARSFGCGERY+LT G E T + SK
Sbjct: 30 ICDTGDIPLPRSLTRYARSFGCGERYRLTD--------GDGNFLEDT-RKTLSKEE---I 77
Query: 582 RPRCWRFXIGSAPLTSITKIDAQXXGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 749
RPR RF IGSAPLTSI K DAQ GGETRQDYKD RRFPL APSCALLF P LP
Sbjct: 78 RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 91.5 bits (217), Expect = 4e-17
Identities = 44/54 (81%), Positives = 45/54 (83%)
Frame = +3
Query: 576 VKRPRCWRFXIGSAPLTSITKIDAQXXGGETRQDYKDTRRFPLEAPSCALLFRP 737
V+ PR RF IGSAPLTSITK DAQ GGETRQDYKDTRRFPL APSCALLF P
Sbjct: 44 VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97
>UniRef50_UPI00015C63F8 Cluster: hypothetical protein
CKO_pCKO3p06146; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO3p06146 -
Citrobacter koseri ATCC BAA-895
Length = 125
Score = 72.9 bits (171), Expect = 1e-11
Identities = 44/100 (44%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Frame = +3
Query: 660 GETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFA 839
GETRQD K P P PPFSL + + GIS RCRSFA
Sbjct: 26 GETRQDLKIITVSDESLPLALSCSNPAVSRIPVPPFSLAGSVALSHSSHSGISARCRSFA 85
Query: 840 PXWAVCTNPPFSPTAAPYPGNYRL----ESXPVKTXYXHW 947
P WAV NPPFSPTAAPYP L +S T HW
Sbjct: 86 PSWAVSKNPPFSPTAAPYPVTVHLSPTRKSTQNATGSSHW 125
Score = 41.1 bits (92), Expect = 0.054
Identities = 37/97 (38%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = +1
Query: 679 IKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGAFS*LTL*VSQFGVG---RSLQXG 849
+KI VS LP ALSCS+PA RIPV PF G+ + S G+ RS
Sbjct: 32 LKIITVSDESLPLALSCSNPAVSRIPV--PPFSLAGSVA--LSHSSHSGISARCRSFAPS 87
Query: 850 LC-AXTPRSARPLXLIPVTIVLSPXR*KXXIXTGSSH 957
+ P + PVT+ LSP R TGSSH
Sbjct: 88 WAVSKNPPFSPTAAPYPVTVHLSPTRKSTQNATGSSH 124
>UniRef50_P03851 Cluster: Uncharacterized 9.4 kDa protein; n=11;
cellular organisms|Rep: Uncharacterized 9.4 kDa protein -
Escherichia coli
Length = 84
Score = 72.9 bits (171), Expect = 1e-11
Identities = 34/63 (53%), Positives = 41/63 (65%)
Frame = +2
Query: 854 VHXPPVQPDRCXLSR*LSS*VXPGKNXLSPLAAATXXRITKXRXXGGATXFXXWGPNYGY 1033
+H PPVQPDRC LS P ++ LSPLAAAT RI++ R GGAT F W PNYGY
Sbjct: 1 MHEPPVQPDRCALSGNYRLESNPVRHDLSPLAAATGNRISRARYVGGATEFLKWWPNYGY 60
Query: 1034 LKK 1042
++
Sbjct: 61 TRR 63
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 70.9 bits (166), Expect = 6e-11
Identities = 35/62 (56%), Positives = 43/62 (69%)
Frame = -2
Query: 884 SGRAERGVXAHSPXWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARGSF 705
S RAERGV A+SP WSERP P+ DT SVSYEKAPRFPKG++ + +G Q R +
Sbjct: 21 SSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQV---SGKRQGRNRRAH 77
Query: 704 QG 699
+G
Sbjct: 78 EG 79
Score = 45.2 bits (102), Expect = 0.003
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = -3
Query: 769 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCRVSPP 656
+K QVSGKRQGRNRRAHEGA+ K SL PP
Sbjct: 60 KKAEQVSGKRQGRNRRAHEGAAGEKSPASLSPVGFRPP 97
Score = 38.3 bits (85), Expect = 0.38
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = -1
Query: 924 PGWTQDDSYRDKXQRSG*TGGXCTQPXLERTTYTELRYLQREL*ESATLPEGRKADRYPV 745
PGWTQDDSYR G P ++ P+G+KA++ V
Sbjct: 8 PGWTQDDSYRKGRSSRAERGVRAYSPAWSERPKPSRDTSSVSYEKAPRFPKGKKAEQ--V 65
Query: 744 SG-RVGTGERTRE-LPGGNAWYLYSPVGFR 661
SG R G R E G + SPVGFR
Sbjct: 66 SGKRQGRNRRAHEGAAGEKSPASLSPVGFR 95
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 62.5 bits (145), Expect = 2e-08
Identities = 29/39 (74%), Positives = 29/39 (74%)
Frame = -2
Query: 566 PFAGLLXTCXFLXYPLILWITVLPPLSELIPLAAAERPS 450
P L TC F YPLILWITVLPPLSEL PLAA ERPS
Sbjct: 19 PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPS 57
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 57.6 bits (133), Expect = 6e-07
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +2
Query: 716 VRSPVPTLPLTGYLSAFLPSGSVALSH 796
+RSPVPTLPLTGYLSAFLPSGSVALSH
Sbjct: 1 MRSPVPTLPLTGYLSAFLPSGSVALSH 27
>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
Beggiatoa sp. SS
Length = 114
Score = 55.2 bits (127), Expect = 3e-06
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +3
Query: 465 CGERYQLTQRR*YG--YPQNQGITQEXTCXQKASKRPGTVKRPRCWRFXIGSAPLTSITK 638
C R Q R G +P+N I + + + + P T F S PLT+ITK
Sbjct: 22 CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81
Query: 639 IDAQXXGGETRQDYKDTRRFPLEAPSCALLFRP 737
I Q +T+ +YK T FPL++PS +LLF P
Sbjct: 82 IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 53.6 bits (123), Expect = 1e-05
Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 366 CINESANARGXAVCXLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 533
CI + A AR AV L ALPL RS TRC RS GCG + R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_P03845 Cluster: Putative uncharacterized protein 1; n=4;
Bacteria|Rep: Putative uncharacterized protein 1 -
Escherichia coli
Length = 42
Score = 51.6 bits (118), Expect = 4e-05
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -2
Query: 893 IRXSGRAERGVXAHSPXWSERPTPN 819
IR SGRAERGV AHSP WSERPTPN
Sbjct: 18 IRRSGRAERGVRAHSPAWSERPTPN 42
>UniRef50_P03846 Cluster: Putative uncharacterized protein 1; n=2;
cellular organisms|Rep: Putative uncharacterized protein
1 - Escherichia coli
Length = 47
Score = 47.6 bits (108), Expect = 6e-04
Identities = 21/28 (75%), Positives = 23/28 (82%)
Frame = -2
Query: 893 IRXSGRAERGVXAHSPXWSERPTPN*DT 810
IR S RAERGV A+SP WSERPTP+ DT
Sbjct: 18 IRRSSRAERGVLAYSPAWSERPTPSRDT 45
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 39.9 bits (89), Expect = 0.13
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +2
Query: 485 HSKAVIRLSTESGDNXGXNM 544
HSKAVIRLSTESGDN G NM
Sbjct: 40 HSKAVIRLSTESGDNAGKNM 59
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 39.9 bits (89), Expect = 0.13
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = +1
Query: 169 DPDMIRYIDEXGQTTTXMQ 225
DPDMIRYIDE GQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 35.9 bits (79), Expect = 2.0
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1
Query: 364 SALMNRPTXGXRRFAYW 414
+ALMNRPT G RRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 35.5 bits (78), Expect = 2.7
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -3
Query: 436 ERGSGRAPNXQTAXPRALADSLMQ 365
+R + APN QTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A7SYZ9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1107
Score = 35.1 bits (77), Expect = 3.6
Identities = 32/100 (32%), Positives = 40/100 (40%)
Frame = +3
Query: 657 GGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSF 836
G T Q D R P +CA RP R D C ++ WR HAVG +
Sbjct: 640 GPATGQAVVDPGRMPRPV-TCA--GRPTRGLDLCGLATVSWVWRSTKCHAVG------KY 690
Query: 837 APXWAVCTNPPFSPTAAPYPGNYRLESXPVKTXYXHWQQP 956
+P + CT P S APYP + + V WQ P
Sbjct: 691 SPP-STCTRRPKSQRDAPYPRSRPGTAKGVSWRSGTWQTP 729
>UniRef50_A3N6N0 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (strain 668)
Length = 755
Score = 34.7 bits (76), Expect = 4.7
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -3
Query: 796 MRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 692
+R+R A RR GG+ G+R+GRNR+ + RG+R
Sbjct: 355 VRRRAAPRRRHGGEWRGRRRGRNRKRRQ--QRGQR 387
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,160,952
Number of Sequences: 1657284
Number of extensions: 15699529
Number of successful extensions: 36010
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 34146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35978
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 118318866513
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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