Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F02
         (1155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    79   5e-15
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    74   2e-13
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    31   2.3  
03_05_0161 + 21400580-21401695                                         29   9.2  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 79.4 bits (187), Expect = 5e-15
 Identities = 43/114 (37%), Positives = 62/114 (54%)
 Frame = +3

Query: 138 GKLVSVVAVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAK 317
           G+LV +V V+DQ RALVD P   + R QI   +L LT  ++          + KA  +A 
Sbjct: 22  GRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEAD 79

Query: 318 LNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAA 479
           +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       LK  AA
Sbjct: 80  VKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 37/97 (38%), Positives = 56/97 (57%)
 Frame = +3

Query: 138 GKLVSVVAVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAK 317
           G+LV +V V+DQ RALVD P   + R QI   +L LT  ++          + KA  +A 
Sbjct: 35  GRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPKKTTLIKAMEEAD 92

Query: 318 LNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 428
           +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 93  VKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 559 GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 380
           G +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 238 SWFKRICCLGTPLPGPSTSARVWSITATTLTN 143
           SWF   C  G P P P  +A V + T++ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,528,981
Number of Sequences: 37544
Number of extensions: 378818
Number of successful extensions: 1031
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3514835996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)