Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F01
         (1206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.24 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   1.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 20/56 (35%), Positives = 20/56 (35%)
 Frame = -3

Query: 553 PPPPXGGXXPXPPPXMXXXXXXFGGGGGGXPKXXXPXPXGXGXFFXGXXXPPPPPP 386
           PPPP     P P P            GG  P    P P G      G   PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP---PPPPGVAG--AGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 429 PXPXGXGXXXLGXPPPPPP 485
           P P   G    G PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 427 PPXPXGXGXXXWGXPPPPP 483
           PP P   G    G PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect(2) = 1.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 435 PXGXGXXXLGXPPPPPP 485
           P G G      PPPPPP
Sbjct: 326 PIGNGSSNSSLPPPPPP 342



 Score = 22.6 bits (46), Expect(2) = 6.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 553 PPPPXGGXXPXPPP 512
           P PP G   P PPP
Sbjct: 352 PLPPQGRSAPPPPP 365



 Score = 22.2 bits (45), Expect(2) = 6.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 415 GXXXPPPPPP 386
           G   PPPPPP
Sbjct: 357 GRSAPPPPPP 366



 Score = 21.8 bits (44), Expect(2) = 1.4
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 468 PPPPPPK 488
           PPPPPP+
Sbjct: 361 PPPPPPR 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.153    0.535 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,694
Number of Sequences: 5004
Number of extensions: 34677
Number of successful extensions: 188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)