Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_F01
         (1206 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.81 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   4.4  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    25   4.4  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   7.7  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/47 (31%), Positives = 16/47 (34%)
 Frame = +3

Query: 747 PGXPPPXXXLGPPPXKXKXXXXXXXXXXXASXXXPPXXLSXGGGXPP 887
           P  PPP   +GPPP                S    P  L  GG  PP
Sbjct: 582 PPAPPPPPPMGPPP---SPLAGGPLGGPAGSRPPLPNLLGFGGAAPP 625



 Score = 26.2 bits (55), Expect = 1.9
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 781 PPPXXXKXXPLSPGGXGGPXXXXPRXXFQXGXGXPPP 891
           PPP      PL+ G  GGP    P      G G   P
Sbjct: 588 PPPMGPPPSPLAGGPLGGPAGSRPPLPNLLGFGGAAP 624



 Score = 25.4 bits (53), Expect = 3.3
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = -3

Query: 586 FXGXXPVFXGXPPPPXGGXXPXPPPXMXXXXXXFGGGGGGXPKXXXP 446
           F    P      PPP     P PPP M        GG  G P    P
Sbjct: 569 FPAGFPNLPNAQPPPA----PPPPPPMGPPPSPLAGGPLGGPAGSRP 611



 Score = 24.6 bits (51), Expect = 5.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 459 LGXPPPPPP 485
           LG PPPPPP
Sbjct: 528 LGPPPPPPP 536



 Score = 24.6 bits (51), Expect = 5.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 468 PPPPPPKXXXXXXMXGGGXG 527
           PPPPPP       + GG  G
Sbjct: 585 PPPPPPMGPPPSPLAGGPLG 604



 Score = 23.4 bits (48), Expect(2) = 0.81
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 402 PPPPPPG 382
           PPPPPPG
Sbjct: 531 PPPPPPG 537



 Score = 22.2 bits (45), Expect(2) = 0.81
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 414 GEXXPPPPPP 385
           G   PPPPPP
Sbjct: 526 GPLGPPPPPP 535


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 20/62 (32%), Positives = 21/62 (33%)
 Frame = +3

Query: 387 GGGGGGXFXPXKXXPXPXGXGXXXLGXPPPPPPKXXXXXXMXGGGXGXXPPXGGGGXPXK 566
           G  GGG   P    P P G      G   P  PK         G  G   P GG G P +
Sbjct: 401 GAPGGGEGRPGA--PGPKGPR----GYEGPQGPKGMDGFDGEKGERGQMGPKGGQGVPGR 454

Query: 567 TG 572
            G
Sbjct: 455 PG 456


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 580 GXXPVFXGXPPPPXGGXXPXPPPXM 506
           G  P   G PP   G   P PPP M
Sbjct: 90  GMIPGMPGAPPLLMGPNGPLPPPMM 114


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 513 GGGXGXXPPXGGGG 554
           GGG G   P GGGG
Sbjct: 204 GGGSGGGAPGGGGG 217


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.316    0.153    0.535 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,453
Number of Sequences: 2352
Number of extensions: 15138
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 136930245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)