Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_E23
(1376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 33 0.70
12_02_0299 - 17051570-17052474,17053542-17053755 32 0.93
11_06_0610 - 25449085-25453284 31 2.8
08_02_1084 - 24232968-24234779 31 2.8
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 32.7 bits (71), Expect = 0.70
Identities = 46/241 (19%), Positives = 51/241 (21%), Gaps = 2/241 (0%)
Frame = -1
Query: 1313 PXXXPXXXPPPXXSXPLFXXXXXXXXXXPXXSPXXXXXXXXPXXPXXXPPXXXXXXXXXX 1134
P P PPP + P F P P P P PP
Sbjct: 544 PPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPP 603
Query: 1133 XXXPPXXXXXXXFXXXPXXXNXXPXPXXXXXXXXXPPPXXXXSFXXXXXXPXPXXPPXXX 954
PP P P P PPP P PP
Sbjct: 604 PPPPPPPILPNRSVPPPP---PPPPPLPNHSVLPPPPPPPPPPSLPNRLVP---PPPAPG 657
Query: 953 XXXXXXXXPXXXXPPXSXSXXXXXXXXXXXS--XXXXPXXXXXNHXXXPXXXXXXXXXXP 780
P PP S S P N P P
Sbjct: 658 IGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVPSAPPPPPP 717
Query: 779 PXXXXHXXXPXXSXXPLPPLPSPXXPXSXXXHSXXXPXXXPXTPXQXXSXSPXHXXFPLX 600
P P P PPLP P + + P T + + P P
Sbjct: 718 PPPANRSNGP---SAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAPKP 774
Query: 599 P 597
P
Sbjct: 775 P 775
Score = 30.3 bits (65), Expect = 3.7
Identities = 20/77 (25%), Positives = 20/77 (25%), Gaps = 1/77 (1%)
Frame = -2
Query: 1123 PXPXXXXPXSXSXPPXXXXXPPP-PXXXXXXXTPLXXXXXPXXPLXXXPXXXXPXXXXXX 947
P P P PP PPP P P P P P P
Sbjct: 552 PPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPI 611
Query: 946 XXXXXXPXXPTPPFPXP 896
P P PP P P
Sbjct: 612 LPNRSVPPPPPPPPPLP 628
Score = 30.3 bits (65), Expect = 3.7
Identities = 29/130 (22%), Positives = 33/130 (25%), Gaps = 3/130 (2%)
Frame = -2
Query: 919 PTPPFPXPXXXXXXNXXXXQXXXXPXXPXLTTXPXPXXXXXXXXXPHXXXXXTXXXPXXP 740
P PP P P N Q P P L P P P P
Sbjct: 565 PPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPP 624
Query: 739 KXX--YPXFPPXXXPXXXXXILXXXXXXXLXP-LSNXYPXHPPXPXFPXXPSXTSFXLFP 569
+ PP P + P + N +P PP P P S T
Sbjct: 625 PPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAAT 684
Query: 568 XXIXXPSPYP 539
P P P
Sbjct: 685 SSKGPPPPPP 694
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 32.3 bits (70), Expect = 0.93
Identities = 28/112 (25%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
Frame = -2
Query: 847 PXXPXLT--TXPXPXXXXXXXXXPHXXXXXTXXXPXXPKXXYPXFPPXXXPXXXXXILXX 674
P P LT + P P P P P PP P
Sbjct: 245 PPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQL 304
Query: 673 XXXXXLXPLSNXYPXHPPXPXFPXXPSXTSFXLFPXXIXXPSPYPLXTHSXY 518
PL + YP PP P P P + FP PYP S Y
Sbjct: 305 PPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAPLFPPYPSPPPSMY 356
Score = 29.5 bits (63), Expect = 6.5
Identities = 29/129 (22%), Positives = 32/129 (24%), Gaps = 5/129 (3%)
Frame = -2
Query: 1084 PPXXXXXPPPPXXXXXXXTPLXXXXXPXXPLXXXPXXXXPXXXXXXXXXXXXPXXP--TP 911
PP PPPP P+ P P P P P +P
Sbjct: 227 PPIPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSP 286
Query: 910 PFPXPXXXXXXNXXXXQXXXXPXXPXLTT---XPXPXXXXXXXXXPHXXXXXTXXXPXXP 740
P P P Q P P L + P P P P P
Sbjct: 287 PSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPPLAPLFP 346
Query: 739 KXXYPXFPP 713
YP PP
Sbjct: 347 --PYPSPPP 353
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 2.8
Identities = 37/176 (21%), Positives = 43/176 (24%), Gaps = 5/176 (2%)
Frame = -3
Query: 1095 PXPPXPXXXXPXPXXXXXXXXXPPSXXXXXLXXXXXXXLXXXPPXXXXXXXPXXPSXXXX 916
P PP P P P + PP P P
Sbjct: 1135 PLPPPVPVSSPPPPEKSPPPPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPVILPP 1194
Query: 915 PPXFXXPXXXXXXTXXXIXXXXSPPXPX*---PXXXXPPPPXXXXXXPTXXXSPXXXXXX 745
PP P + PP P P PPPP P SP
Sbjct: 1195 PPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPEKSPPPAAPV 1254
Query: 744 XXXPXTPXSLPXXXXFXXXSFXSSPXXLXSNPXPXXIXITXPXXXS--PXXXLXLP 583
P SLP P + S P P + + P S P + LP
Sbjct: 1255 ILSPPAVKSLPPPAPVSL-----PPPPVKSLPPPAPVSLPPPVVKSLPPPAPVSLP 1305
>08_02_1084 - 24232968-24234779
Length = 603
Score = 30.7 bits (66), Expect = 2.8
Identities = 17/62 (27%), Positives = 18/62 (29%)
Frame = -1
Query: 782 PPXXXXHXXXPXXSXXPLPPLPSPXXPXSXXXHSXXXPXXXPXTPXQXXSXSPXHXXFPL 603
PP P S P PPLP P H P P + P PL
Sbjct: 79 PPPPQQQQPPPQHSLPPPPPLPQAPPPQQQKVHIPGVAAPAPNHPPSQPNLPPPAAPAPL 138
Query: 602 XP 597
P
Sbjct: 139 PP 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,465,119
Number of Sequences: 37544
Number of extensions: 241562
Number of successful extensions: 1036
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4353229848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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