Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E22
         (1137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    31   0.22 
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    29   1.2  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    28   2.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   4.8  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    26   8.5  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   8.5  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 31.5 bits (68), Expect = 0.22
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 1025 VPRNVGGGDAGYHWLXSHWFG 963
            +PR V  G+  Y W   HWFG
Sbjct: 1664 LPREVASGENNYSWWDGHWFG 1684


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 627 ISHWLKIFFFKYLSLVNTISYAIQQL 550
           I+ W K+F   + S+V T+ YAI  L
Sbjct: 100 INEWRKLFDINFFSVVETVKYAIPHL 125


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 169 WVDVTSDFFKYIKAXXXXXXXXXXXXXXXFEAMSAIEMMDPKMDAGM 309
           +VD T  +F+  K+                +++SA E+M+PKMD+G+
Sbjct: 37  YVDCTKSYFEATKSLKEEQLVCDPKFTL-LDSISAFEIMEPKMDSGI 82


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 289 PKMDAGMMCNRGTPKPLNFHQAVA 360
           P  D G++CN   P    FH +VA
Sbjct: 8   PSSDCGILCNHSVPSFPPFHSSVA 31


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 661 HTYDASLEVTESKCISLLR 717
           H++DA L    SKC+ +LR
Sbjct: 292 HSFDAQLSSAASKCVQILR 310


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 406 GIIDATMACIVSWLEGHSLAQTVFTNLYLHQPHSINNK 519
           G+I  T+ C+++ L+ H L      ++ L Q  S+++K
Sbjct: 291 GVIMPTLTCLLTHLKSHPLQSANPADVILEQLESLSSK 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,282,778
Number of Sequences: 5004
Number of extensions: 86289
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)