Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E17
         (1333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   2.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   2.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   2.4  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    29   7.4  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = -2

Query: 873 GXXAPPXXXRPTPXXXTXPPGXXGXAXPRRRGKGDREPXXRQGR---XRXPPEGXXXGEX 703
           G   PP   R +P   + PP   G + P   G G   P  RQ R    R PP G      
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPP-PAGTGSPPPPPRQKRQAPERSPPTGSPPTGS 353

Query: 702 XXSR*PXRGLXPG 664
             +  P RG  PG
Sbjct: 354 PPTGRPPRG-GPG 365


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = -2

Query: 873 GXXAPPXXXRPTPXXXTXPPGXXGXAXPRRRGKGDREPXXRQGR---XRXPPEGXXXGEX 703
           G   PP   R +P   + PP   G + P   G G   P  RQ R    R PP G      
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPP-PAGTGSPPPPPRQKRQAPERSPPTGSPPTGS 374

Query: 702 XXSR*PXRGLXPG 664
             +  P RG  PG
Sbjct: 375 PPTGRPPRG-GPG 386


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = -2

Query: 873 GXXAPPXXXRPTPXXXTXPPGXXGXAXPRRRGKGDREPXXRQGR---XRXPPEGXXXGEX 703
           G   PP   R +P   + PP   G + P   G G   P  RQ R    R PP G      
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPP-PAGTGSPPPPPRQKRQAPERSPPTGSPPTGS 359

Query: 702 XXSR*PXRGLXPG 664
             +  P RG  PG
Sbjct: 360 PPTGRPPRG-GPG 371


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +1

Query: 706 FPPGXSLGXXPXSXLPXXR--FPVPLSPSAXPGXSXXPRXXGXXXRCXSXXXRRGXXAPX 879
           +PP   +   P   +   R  +P P+SP + P  +  PR      R      R G  A  
Sbjct: 379 YPPPPKVDLPPPGIVQLDRVVYP-PVSPPSPPLAAAAPRASEHFVRNGPVLGRMGQTAAP 437

Query: 880 PPVXPP 897
           PP  PP
Sbjct: 438 PPPPPP 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,856
Number of Sequences: 27780
Number of extensions: 197738
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3735997402
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)