Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E15
         (1216 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    35   0.026
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.56 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   3.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 499 PKXQPPXPPXXPXFFXXXXXPPPPPP 422
           P   PP PP  P F      PPPPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -2

Query: 486 PXXPPXXPFFXXXXXPPXPPPXXLKKXNXXPP 391
           P  PP   F      PP PPP  +KK     P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 487 PPXPPXXPXFFXXXXXPPPPPP 422
           PP PP  P        PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.5 bits (63), Expect = 0.98
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 484 PXPPXXPXFFXXXXXPPPPPPXP 416
           P PP  P        PPPPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 499 PKXQPPXPPXXPXFFXXXXXPPPPPPXP 416
           P  QPP              PPPPPP P
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPPP 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.143    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,650
Number of Sequences: 5004
Number of extensions: 19507
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)