Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E10
         (1204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   194   2e-50
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   194   2e-50
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    28   2.2  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    27   6.9  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   9.1  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  194 bits (474), Expect = 2e-50
 Identities = 88/158 (55%), Positives = 115/158 (72%)
 Frame = +2

Query: 83  MXSLKLQXRLAASVMRCGKKXVWLDPNEINEXANTNSRQNIRKXIKDGLVIKKPVAVHSR 262
           M +L+ Q RLAASV++CGK+ VW+DPNEI+E +N NSRQNIRK +KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 263 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 442
            R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 443 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 556
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  194 bits (474), Expect = 2e-50
 Identities = 88/158 (55%), Positives = 115/158 (72%)
 Frame = +2

Query: 83  MXSLKLQXRLAASVMRCGKKXVWLDPNEINEXANTNSRQNIRKXIKDGLVIKKPVAVHSR 262
           M +L+ Q RLAASV++CGK+ VW+DPNEI+E +N NSRQN+RK IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 263 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 442
            R+RK   A+R GRH G+GKR+GTA ARMP   +W                + KID+HLY
Sbjct: 61  FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120

Query: 443 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 556
           H+LY++AKGN FK+KR L+E+I R KAE  RTK++ +Q
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 285 SVFLRTRAREWTATGFLMTRPSLIXLRMFC 196
           S F  T  REWT    L T    + +R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -1

Query: 631 FLLLGGNT-----FLAALACLLYFIAAGL 560
           F+  GGN      FL A  C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 362 VPSVAYAHWQYLFSYQS 312
           +PSV YA WQ L  Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,328
Number of Sequences: 5004
Number of extensions: 53741
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)