Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP27_F_E10
(1204 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 214 1e-55
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 213 2e-55
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.45
03_02_0050 + 5272471-5274861 30 3.2
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 29 9.6
04_04_1687 - 35365766-35366356,35367137-35368135 29 9.6
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 9.6
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 29 9.6
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 9.6
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 214 bits (523), Expect = 1e-55
Identities = 99/158 (62%), Positives = 117/158 (74%)
Frame = +2
Query: 83 MXSLKLQXRLAASVMRCGKKXVWLDPNEINEXANTNSRQNIRKXIKDGLVIKKPVAVHSR 262
M SLKLQ RLAASV++CGK VWLDPNE+NE + NSRQNIRK +KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 263 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 442
+R R+ EA++KGRH G+GKRRGT AR+P K LW AKKID+H+Y
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 443 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 556
H +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 213 bits (520), Expect = 2e-55
Identities = 98/158 (62%), Positives = 117/158 (74%)
Frame = +2
Query: 83 MXSLKLQXRLAASVMRCGKKXVWLDPNEINEXANTNSRQNIRKXIKDGLVIKKPVAVHSR 262
M SLKLQ RLA+SV++CGK VWLDPNE+NE + NSRQNIRK +KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 263 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 442
+R R+ EA++KGRH G+GKRRGT AR+P K LW AKKID+H+Y
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120
Query: 443 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 556
H +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.45
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 455 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 556
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>03_02_0050 + 5272471-5274861
Length = 796
Score = 30.3 bits (65), Expect = 3.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 628 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLVLEHI 470
LLL L+ +CL + L +HL P LLS +P+D L H H +L H+
Sbjct: 79 LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 28.7 bits (61), Expect = 9.6
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +2
Query: 98 LQXRLAASVMRCGKKXVWLDPNEINEXANTNSRQNIRKXI---KDGLVIKKPVAVHSRAR 268
LQ L + K W D E+N + R + K + D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 269 VRKNTEARRKGRHCGFG 319
+ T RKGR GFG
Sbjct: 806 DEETTSISRKGRAQGFG 822
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 28.7 bits (61), Expect = 9.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 232 HQETCSSPLPRPCPQKHR 285
H E C +PLP P P HR
Sbjct: 53 HAEQCPAPLPDPLPSAHR 70
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 28.7 bits (61), Expect = 9.6
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 167 INEXANTNSRQNIRKXIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 340
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 28.7 bits (61), Expect = 9.6
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +2
Query: 98 LQXRLAASVMRCGKKXVWLDPNEINEXANTNSRQNIRKXI---KDGLVIKKPVAVHSRAR 268
LQ L + K W D E+N + R + K + D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 269 VRKNTEARRKGRHCGFG 319
+ T RKGR GFG
Sbjct: 757 DEETTSISRKGRAQGFG 773
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 9.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 224 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 337
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,914,566
Number of Sequences: 37544
Number of extensions: 444142
Number of successful extensions: 1198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3678130032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -