Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E09
         (1186 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20 pro...   186   1e-46
BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20 p...   186   1e-46
BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20 p...   186   1e-46
AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20 p...   186   1e-46
AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20 p...   118   3e-26

>L06498-1|AAA60286.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  186 bits (453), Expect = 1e-46
 Identities = 90/117 (76%), Positives = 101/117 (86%)
 Frame = +2

Query: 161 SGKAIXXPQAAVSPLHRIRLTLXSRNVRSLXQVCADLINGAKQQXLRVKGPVRMPTKLLR 340
           +GK    P+ A+   HRIR+TL SRNV+SL +VCADLI GAK++ L+VKGPVRMPTK LR
Sbjct: 6   TGKTPVEPEVAI---HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLR 62

Query: 341 ITTRKTPCGEGSKXWDRFQXRIHKXVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 511
           ITTRKTPCGEGSK WDRFQ RIHK +IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 63  ITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC087850-1|AAH87850.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  186 bits (453), Expect = 1e-46
 Identities = 90/117 (76%), Positives = 101/117 (86%)
 Frame = +2

Query: 161 SGKAIXXPQAAVSPLHRIRLTLXSRNVRSLXQVCADLINGAKQQXLRVKGPVRMPTKLLR 340
           +GK    P+ A+   HRIR+TL SRNV+SL +VCADLI GAK++ L+VKGPVRMPTK LR
Sbjct: 6   TGKTPVEPEVAI---HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLR 62

Query: 341 ITTRKTPCGEGSKXWDRFQXRIHKXVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 511
           ITTRKTPCGEGSK WDRFQ RIHK +IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 63  ITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>BC007507-1|AAH07507.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  186 bits (453), Expect = 1e-46
 Identities = 90/117 (76%), Positives = 101/117 (86%)
 Frame = +2

Query: 161 SGKAIXXPQAAVSPLHRIRLTLXSRNVRSLXQVCADLINGAKQQXLRVKGPVRMPTKLLR 340
           +GK    P+ A+   HRIR+TL SRNV+SL +VCADLI GAK++ L+VKGPVRMPTK LR
Sbjct: 6   TGKTPVEPEVAI---HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLR 62

Query: 341 ITTRKTPCGEGSKXWDRFQXRIHKXVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 511
           ITTRKTPCGEGSK WDRFQ RIHK +IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 63  ITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB061842-1|BAB79480.1|  119|Homo sapiens ribosomal protein S20
           protein.
          Length = 119

 Score =  186 bits (453), Expect = 1e-46
 Identities = 90/117 (76%), Positives = 101/117 (86%)
 Frame = +2

Query: 161 SGKAIXXPQAAVSPLHRIRLTLXSRNVRSLXQVCADLINGAKQQXLRVKGPVRMPTKLLR 340
           +GK    P+ A+   HRIR+TL SRNV+SL +VCADLI GAK++ L+VKGPVRMPTK LR
Sbjct: 6   TGKTPVEPEVAI---HRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLR 62

Query: 341 ITTRKTPCGEGSKXWDRFQXRIHKXVIDLHSPSEIVKQITSINIEPGVEVEVTIADA 511
           ITTRKTPCGEGSK WDRFQ RIHK +IDLHSPSEIVKQITSI+IEPGVEVEVTIADA
Sbjct: 63  ITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119


>AB007156-1|BAA25820.1|   60|Homo sapiens ribosomal protein S20
           protein.
          Length = 60

 Score =  118 bits (285), Expect = 3e-26
 Identities = 54/60 (90%), Positives = 56/60 (93%)
 Frame = +2

Query: 305 KGPVRMPTKLLRITTRKTPCGEGSKXWDRFQXRIHKXVIDLHSPSEIVKQITSINIEPGV 484
           KGPVRMPTK LRITTRKTPCGEGSK WDRFQ RIHK +IDLHSPSEIVKQITSI+IEPGV
Sbjct: 1   KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,696,172
Number of Sequences: 237096
Number of extensions: 1684360
Number of successful extensions: 3964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3963
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16623961460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)