Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E07
         (1200 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   1.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   1.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   1.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   3.1  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   4.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   4.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   9.3  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 702 KIKCNTHNGSEHNLNYFCVLLLRTKIYC 785
           K+ CN +    +N+NY   + +   IYC
Sbjct: 98  KLYCNNYKKLYYNINYIEQIPIPVPIYC 125


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 702 KIKCNTHNGSEHNLNYFCVLLLRTKIYC 785
           K+ CN +    +N+NY   + +   IYC
Sbjct: 98  KLYCNNYKKLYYNINYIEQIPIPVPIYC 125


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 702 KIKCNTHNGSEHNLNYFCVLLLRTKIYC 785
           K+ CN +    +N+NY   + +   IYC
Sbjct: 98  KLYCNNYRKLYYNINYIEQIPIPVPIYC 125


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +2

Query: 788 SNRNFGNVKTKLYFKSSFNYYLYNSRKPRKMPSNISTIKMQIHTEIFSMRAQSVIFTHI 964
           +N N+ N   KLY+K   NY +   + P  +P        +      S++ Q   F HI
Sbjct: 334 NNNNYNNYNKKLYYK---NYIINIEQIPVPVPIYCGNFPPRPMGPWISIQEQIPRFRHI 389


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 873 GKCLRTSLPLKCKYILKYSQCVPSQSSLHIFYI 971
           GKCL TS    C  I   ++CV  +S+  ++++
Sbjct: 112 GKCLPTSGSDNCNKIYNLAKCV-QESAPDVWFV 143


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 873 GKCLRTSLPLKCKYILKYSQCVPSQSSLHIFYI 971
           GKCL TS    C  I   ++CV  +S+  ++++
Sbjct: 112 GKCLPTSGSDNCNKIYNLAKCV-QESAPDVWFV 143


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 631 RYKIVVKSDNAINLNSGDGGR 693
           RYK V  S N I+   G+GGR
Sbjct: 86  RYKGVPSSLNVISEKIGNGGR 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,157
Number of Sequences: 438
Number of extensions: 5700
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40970340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)