Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E05
         (1012 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    28   2.4  

>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 22/100 (22%), Positives = 45/100 (45%)
 Frame = +3

Query: 57  SALSHASXRSKSEPEXRVIPRRCAKTDALIVNXSENVIFYSSTGLILTRLKXIFICIML* 236
           S L + +  S+      +      K   LI++   +V    +  L +  L   F   +L 
Sbjct: 356 STLRNLAASSERNKRAIIEANAIQKLRCLILDAPVSVQSEMTACLAVLALSDEFKSYLLN 415

Query: 237 YKPSLVVFSISNTLTVKIQG*SVGAISVLSST*SGFSRII 356
           +    V+  +++++++++QG S  A+  LSS    +SR I
Sbjct: 416 FGICNVLIPLTDSMSIEVQGNSAAALGNLSSNVDDYSRFI 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,721
Number of Sequences: 5004
Number of extensions: 47392
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 525259918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)