Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E05
         (1012 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81483-6|CAE53731.1|  277|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z70780-17|CAA94830.3|  264|Caenorhabditis elegans Hypothetical p...    30   3.0  
Z70754-11|CAA94780.3|  264|Caenorhabditis elegans Hypothetical p...    30   3.0  

>Z81483-6|CAE53731.1|  277|Caenorhabditis elegans Hypothetical
           protein C43D7.9 protein.
          Length = 277

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = -1

Query: 382 FLEISLLCKIILENPD*VELRTLIAPTLYPCILTVSVFEILNTTSDGLYHNIIH 221
           F+ I++ C+II  NP  V+LRTLI  T   C+   +   +LN  SD      IH
Sbjct: 60  FVRINVECRIIKWNPSEVDLRTLIDHT--RCVFHTNEVCLLNIKSDNHDWQSIH 111


>Z70780-17|CAA94830.3|  264|Caenorhabditis elegans Hypothetical
           protein F58E6.10 protein.
          Length = 264

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 550 YRAHRRPSPMPPARSEHGNSIVGDTAGLSREIPFLN*DHKHRKRTLIVR 404
           Y++++RP P P A   + NS     A     I     D +  +++L +R
Sbjct: 182 YQSYQRPMPYPTASPSYSNSFTNPIANFGHSITSFQADDEFYQKSLALR 230


>Z70754-11|CAA94780.3|  264|Caenorhabditis elegans Hypothetical
           protein F58E6.10 protein.
          Length = 264

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 550 YRAHRRPSPMPPARSEHGNSIVGDTAGLSREIPFLN*DHKHRKRTLIVR 404
           Y++++RP P P A   + NS     A     I     D +  +++L +R
Sbjct: 182 YQSYQRPMPYPTASPSYSNSFTNPIANFGHSITSFQADDEFYQKSLALR 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,394,766
Number of Sequences: 27780
Number of extensions: 286679
Number of successful extensions: 829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2657408452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)