Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E03
         (1209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.0  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   4.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 504 PGGXPPPPPPXXGKKXXXPP 445
           PG  PPPPPP   +    PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPP 25



 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 504 PGGXPPPPPPXXGKKXXXPP 445
           P G PPPPPP  G +    P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQP 24


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 498 GXPPPPPPXXGKKXXXPP 445
           G PPPPPP  G     PP
Sbjct: 759 GGPPPPPPPPGVAGAGPP 776



 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 501 GGXPPPPPPXXGKKXXXPP 445
           GG PPPPPP        PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPP 777


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect(2) = 4.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = -1

Query: 528  PXGGGGXXPGGXPPPPPP 475
            P       P   PPPPPP
Sbjct: 1083 PVANNVSKPSAVPPPPPP 1100



 Score = 21.4 bits (43), Expect(2) = 4.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 492  PPPPPPXXGKK 460
            PPPPPP   +K
Sbjct: 1097 PPPPPPAEVEK 1107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.151    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,230
Number of Sequences: 5004
Number of extensions: 14351
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)