Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E02
         (1138 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   2.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   2.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   2.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   2.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   2.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   5.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   9.9  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +1

Query: 577 KVEYQFQNLFNGNRDLAKTIHDFANSNWREIFQEVAPPMVKAIVSKIIHET 729
           +++Y + N  N N ++    + + N    ++     PP+   I   I+H+T
Sbjct: 59  QLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDT 109


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +1

Query: 577 KVEYQFQNLFNGNRDLAKTIHDFANSNWREIFQEVAPPMVKAIVSKIIHET 729
           +++Y + N  N N ++    + + N    ++     PP+   I   I+H+T
Sbjct: 59  QLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDT 109


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 906 YQHPANTMFGCDVILNLTTRPV 841
           ++HP + +  C  I NLTTR V
Sbjct: 380 HRHPQDEIPYCGKIFNLTTRQV 401


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +1

Query: 577 KVEYQFQNLFNGNRDLAKTIHDFANSNWREIFQEVAPPMVKAIVSKIIHET 729
           +++Y + N  N N ++    + + N    ++     PP+   I   I+H+T
Sbjct: 59  QLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDT 109


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +1

Query: 577 KVEYQFQNLFNGNRDLAKTIHDFANSNWREIFQEVAPPMVKAIVSKIIHET 729
           +++Y + N  N N ++    + + N    ++     PP+   I   I+H+T
Sbjct: 59  QLQYGYHNHQNYNSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDT 109


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 687 RSHLLKDFPPVAVREIVDCLRQITVAVKQILELVFD 580
           +S+ +++  P   R +VD  R  T+ VKQ  + V D
Sbjct: 18  KSYSIENGYPARRRSLVDDARFETLVVKQTKQSVLD 53


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 673 QEVAPPMVKAIVSKIIHETFKLF 741
           +++ PP ++ I+    HE F LF
Sbjct: 61  KDITPPDLEGILDLGRHENFSLF 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,555
Number of Sequences: 336
Number of extensions: 4158
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 32991040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)