Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP27_F_E02
         (1138 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    63   5e-12
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.8  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   5.0  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   5.0  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   8.7  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 62.9 bits (146), Expect = 5e-12
 Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 14/209 (6%)
 Frame = +1

Query: 166 CLKSSAQKAVPFLAAGIADLGIETMDPMTVGRVNTVQAG----LHMDFRDTTXXXXXXXX 333
           C+  + + AV  LA G+    I  ++P+ V  V   ++     L  ++++          
Sbjct: 43  CIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNL 102

Query: 334 XXXXXXX-YDKTLLDLKC---SVTLVGEYTLGGQLLILPIEGTGKYXXXXXXXXXXXXLD 501
                   +DK +L  +     V  V +Y + G++L+LP+ G GK             + 
Sbjct: 103 EIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIY 162

Query: 502 VEERIVEGDRYWHVSDWKHSAE-DVSKVEYQFQNLFNGNRDLAKTIHDFANSNWREIFQE 678
            E+    G+ Y  +   KH+ + + +KV+ +F+NLF+GN++L + ++ F N N   +F+E
Sbjct: 163 CEKYEKNGETYLRIK--KHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKE 220

Query: 679 VAPPMVKA---IVSKIIHETFKL--FDKV 750
           +     +    + +KI +E F    FDK+
Sbjct: 221 LQAAYEETFSLVFTKIDNEIFNRVPFDKI 249


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 824 SRHPSHTGRVVKFKITSQPNIVLAG 898
           S H +H G+ ++ +I     +VLAG
Sbjct: 571 SHHLTHKGKPIRMRIGIHTGMVLAG 595


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -1

Query: 478 CPG---F*SCTFRCLRWVVSVVGHPTCI 404
           CP    F  C  RC R+  +VV  P CI
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCI 64


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -1

Query: 478 CPG---F*SCTFRCLRWVVSVVGHPTCI 404
           CP    F  C  RC R+  +VV  P CI
Sbjct: 37  CPSNEIFSRCDGRCQRFCPNVVPKPLCI 64


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +1

Query: 196 PFLAAGIADLGIETMDPMTVGR 261
           PFL++ ++ + +  + P T+GR
Sbjct: 4   PFLSSSVSTVIVTALTPSTLGR 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,295
Number of Sequences: 438
Number of extensions: 4938
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38439819
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)